| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4491 |
|---|
| Symbol | |
|---|
| ID | 5091915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 5415382 |
|---|
| End bp | 5418771 |
|---|
| Gene Length | 3390 bp |
|---|
| Protein Length | 1129 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644743907 |
|---|
| Product | TonB-dependent receptor, plug |
|---|
| Protein accession | YP_001196809 |
|---|
| Protein GI | 146302218 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAATC ACTTTAGGAT TAAAAAAGAT TCTAATTGTG TATCTGAATT TAATTTGAAA
AAGAAAATGA TGATATTATC GCTATTGTTT TCTTTATTTC AGGTTTCTGG ATACGCCATT
AGTTCTACAA GTACAACTGT ATCTTCAAAT GTACTTCAAA CAGAAATTAA AGGACAGGTA
AATGACGAAA ATGGTATGCC ATTGCCGGGA GTTACTGTTT TAGAAAAAGG AAGTAAAAAT
GCTGCTTTAA CAGATTTTGA CGGAAAGTTT TCTTTAAAAG TAGAGAATCC TAATTCTGTA
TTACTAATAT CTTTTTTAGG TTATACGACT GCCGAAGTCA GCCTAAAAGG TAAAACTTCA
ATTACTGTAA AAATGCAAAA AGCAACAACT TCATTAGATG AGGTAGTTGT AGTAGGTTAT
GGTAAAATGA AGAAAAAGGA TTTAACGGGA GCAATTGTTC AGGTTTCACC TGATAAATTA
GTAAACCAAA ATCCGCAGAC GGTTCAGGAT ATCTTAAGAG GTACTCCTGG AGTAAGAGTA
GGGTATGATC CTTCTGCAAA AGGAGGCGGG AGAATACAAA TTCGTGGTCA GACTTCTGTA
TATACTGCCA GTAATAATAA GGATGATAAA TACGGACCTC ATAATGACCC GCTTATTATT
TTAGACGGTA TGCAGTTTTA TGGTGAACTT TCAGAAATTA ATCCTGACGA TATTGCACAG
CTTGATATTT TAAAAGATGC TTCGGCAGCA TCTGTATACG GATCGAGAGC AGCAGCTGGG
GTTATTCTTA TTTCAACTAA AAAAGGTAAA ACAGGTAAAC CTATGGTTAG TTTTACTACT
AACACAACGA TCAGCAATAA AAGCGCCTAT CGTAAAGTGT ATTCTCCAGA AGGCTACTTA
AAATATCGTG AAGACTGGGA AACTGCCCAA ACGTATGGTG TTAATACTGC AACAGGGCAA
TACGAAGCCT TTATAACAGG AACAGTTGCA AATGGCAGAC CGGGGTATTT TTCAAATCCA
AATGATTTAT CAAAATGGGG CATTACCGAA GCACAATGGC TGGCTTATCA GCCAACAGCT
CAAACAGTCG GGAAAAGCAG TAAAGAAGTT TGGGGAGCCC GTTTAGGACT AAATTTTGAT
CCTTCGCTGA TGGCAAATTT CCTGGCTGAT AAAACACACG ACTGGAGTAA CAGTTCTTTT
AGAACAGGAA TTAATCATGA TAATAATTTG AGTATTTCCG GTGCAGGTGA CCGAGTAAAT
TATTATATGT CCTTTGGTTA TTTAACTTCA GAAGGAGCGA TTGTTGGAAA TGATTATAAA
TCAGCTCGTT CTAACATGAA AGTTGATGCT AAAGTTACGG ACTGGCTAGA CCTTGGATTA
AACGTTAATT TTCAGGATCG ATCAGATGGA GATATAACTC CTTCTTTAGG AACAAACCCC
GGAGATAATA ATATGATGAG AACCAGCCCG TTTGGAACTT TTATAGATGC AAATGGCAAC
TATGAAAGAC AGCCGATGGG AAAAAATGTC TCAGGACAAA ATTATAACTA TTACTACGAG
CGTCAATTTA TTGAAAAAGA GACAGGATAT ACAACATTAA ATACCATTTT CAATGCTAAA
GTAAGTCTGC CTTTAGGTAT TACTTACACT TTTAACATTG CTCCTCGTTA TCAGTTTTTT
CATGATCGTT ATTTCAGATC TACGCAGAAC CCAAACTGGC CTGCAGCTAC TACAGGTGTA
AACAGAAACA ATTCAACAAG ATTTGATTAT AATCTGAATA ATAACTTAAC ATGGGATTAT
ACGATTGCTC AAAAACATCA TATTATAGCC ACTTTTGTTC AGGAAGCTGA AGAACGCCGT
TTTTGGTCAG ATGGAATGGA TGCTTATAAT ATTCAGCCTT CAGATGCTCT GGGATTTCAC
CTTGTTAATA CGGCAACAAT GGCTAATAGT GCAATTAGAT CAAACGATAC ACATGAAACG
GCAGATGCAT TAATGGCAAG ACTTTTCTAT TCGTTTGATA ATCGTTATAT GCTTACAGCG
ACTATTCGCC GTGATGGATA TTCGGCATTT GGAGCTTCAA ATCCTTATGC AGTTTTCCCT
TCTTTTGGAG TTGCATGGAA CTTTAAAAAT GAAAAATGGT TCAACTGGGA TGCTATGAGT
ACTGGTAAAT TGCGTTTGTC TTGGGGTAAA AATGGAAACA GAACGCTTGC AGATCCGTAC
ATTTCTTTGG CAAATCTTGT AAATACCGGA ACAATGGGGT ATTTAGATCC TTCTGGAAAA
GCACTTGAAT TGAAATATTT AGCGCTTGAC CGTATGGCAA ATCCAAATCT GGAATGGGAA
AAAACAACAT CAACAAACAT TGGTCTTGAT TTAGGTTTCT TAAATGACCG TATTACTGCT
ACTGTAGATG CTTACAGAGC CTCTACACGT GATATGATTA TGAGTCAGTC ATTACCTGGT
TTTACAGGAT TTTCATCAAT TGCTACCAAT CTTGGAGAAG TTCAAAATCA AGGTATTGAG
TTGAGTCTTA ATACGCTTAA TATGAAAAGA GAAAATTTTG AATGGCGTAC TACATTTGGA
ATATCTTACA ACGAGAACAA AATTGTGTCA TTGTATGGCA ATATGGTAGA CATTAAAGAT
GAAAACGGTA ATGTTATTGG AAGACAAGAA GGAAATGATT CTGCAAATGG ATGGTTTATA
GGAAAATCAA TTACTCAAAT TTGGGATTAT AGAATAACTG GAATCTGGCA GAAAGATGAA
TGGAAAGAGG CTCAAAAATA CGGACAGCGC CCTGGAGATC CAAAAGTTGC CAACAGCTAT
ACGGCAGATG ATGTAGATGC GGTAGATGCA GATGGAAACC CTTATAAAAA AGCAGTTTAT
AATGAAAAAG ACAAACAGTT TTTAGGAAAC TCAAATTCTC CTGTACAATG GTCGCTGCGT
AATGATTTCA AGATTTATAA AAATTGGGAT TTGGGTATCA GTATGTATTC TAATGTGGGA
GGAAAGTCAC TTAACTCAAA TTATATGAAT ACTTTCAACG ATGCGAGTTT ATATAAATTC
AACTTCAATC CTTATGTAAA CCCGTATTGG ACACTTGACA ACCCAACTAA TGAATGGGCG
CGTCTTGATG CTAAAGGACC TGCTGGAACT CCGGTTGCGC CGGGAAGATT GTACGACCGC
AGTTTTATTC GTCTGGATAA CATTTCGTTA GCTTACACGC TTCCTAAAGA TATTTTAGAT
AAAGTACATA TTAAAAGTAT AAAAATTTAT GCTTCGGTTC AAAACGTTGC AACATGGTCT
GCTTCTAAAG AATGGAAATA TTACGGAGAT CCAGAAACAG GCGGACTGGC TACAAGACAG
TTTAATTTAG GTTTTAATTT CCAACTTTAA
|
|---|
| Protein sequence | MKNHFRIKKD SNCVSEFNLK KKMMILSLLF SLFQVSGYAI SSTSTTVSSN VLQTEIKGQV
NDENGMPLPG VTVLEKGSKN AALTDFDGKF SLKVENPNSV LLISFLGYTT AEVSLKGKTS
ITVKMQKATT SLDEVVVVGY GKMKKKDLTG AIVQVSPDKL VNQNPQTVQD ILRGTPGVRV
GYDPSAKGGG RIQIRGQTSV YTASNNKDDK YGPHNDPLII LDGMQFYGEL SEINPDDIAQ
LDILKDASAA SVYGSRAAAG VILISTKKGK TGKPMVSFTT NTTISNKSAY RKVYSPEGYL
KYREDWETAQ TYGVNTATGQ YEAFITGTVA NGRPGYFSNP NDLSKWGITE AQWLAYQPTA
QTVGKSSKEV WGARLGLNFD PSLMANFLAD KTHDWSNSSF RTGINHDNNL SISGAGDRVN
YYMSFGYLTS EGAIVGNDYK SARSNMKVDA KVTDWLDLGL NVNFQDRSDG DITPSLGTNP
GDNNMMRTSP FGTFIDANGN YERQPMGKNV SGQNYNYYYE RQFIEKETGY TTLNTIFNAK
VSLPLGITYT FNIAPRYQFF HDRYFRSTQN PNWPAATTGV NRNNSTRFDY NLNNNLTWDY
TIAQKHHIIA TFVQEAEERR FWSDGMDAYN IQPSDALGFH LVNTATMANS AIRSNDTHET
ADALMARLFY SFDNRYMLTA TIRRDGYSAF GASNPYAVFP SFGVAWNFKN EKWFNWDAMS
TGKLRLSWGK NGNRTLADPY ISLANLVNTG TMGYLDPSGK ALELKYLALD RMANPNLEWE
KTTSTNIGLD LGFLNDRITA TVDAYRASTR DMIMSQSLPG FTGFSSIATN LGEVQNQGIE
LSLNTLNMKR ENFEWRTTFG ISYNENKIVS LYGNMVDIKD ENGNVIGRQE GNDSANGWFI
GKSITQIWDY RITGIWQKDE WKEAQKYGQR PGDPKVANSY TADDVDAVDA DGNPYKKAVY
NEKDKQFLGN SNSPVQWSLR NDFKIYKNWD LGISMYSNVG GKSLNSNYMN TFNDASLYKF
NFNPYVNPYW TLDNPTNEWA RLDAKGPAGT PVAPGRLYDR SFIRLDNISL AYTLPKDILD
KVHIKSIKIY ASVQNVATWS ASKEWKYYGD PETGGLATRQ FNLGFNFQL
|
|---|
| |