| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4482 |
|---|
| Symbol | |
|---|
| ID | 5091907 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 5404635 |
|---|
| End bp | 5407745 |
|---|
| Gene Length | 3111 bp |
|---|
| Protein Length | 1036 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644743899 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_001196801 |
|---|
| Protein GI | 146302210 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAAA ATTTACTCAT ATTCAGTCTT CGTAACCGAT GGGTTATAAT TGCAATCAAC
CTTGTTTTAA TGGCAGTTGG TTTTTGGTGT TTTACTAAAT TAAAAATAGA AGCATACCCG
GATATTGCAG ATACCAATGT AATTATTGTA GCGCAGTATG ACGGAAGAGC CGCTGAGGAA
GTAGAACAGC AGGTTACGGT TCCTATTGAA CGTGCTTTGC AGAATACGCC AAATGTTTTA
GACCGCAGAA GCAGAACTAT TTTTGGTTTG TCTGTAGTTC AACTTACTTT TAAAGACGGT
ACAGATGATT ATTTTGCGCG TCAGCAGGTA ACAGAACGAC TTACAGAAGC TGAATTGCCG
GATGGAGTTA CACCTTCATT GGCACCGCTT TCTACCGCCG TTGGCGAGAT TTTCAGATAT
GTTGTAGAAG CACCGTCAAA CTACAGCCAG GCAGAACTTA GAGATTTACA GGACTGGGTA
ATAAAACCTG CCTTGCTGCA AGTACCGGGA ATTGCCGATG TAACTACTTT TGGCGGACCA
TTAAAGCAGT TTCATATTAT TACTTCGCCG GAAAAGTTAA GAAAATACAA TCTTACGCTT
CAAAACGTAA TGGATGCAGT AGATGCAAAC AATCAAAATA CAGGCGGAAA TATAATTGAA
AGAGGCGGAC AAGGTTTTGC GGTGCGTGGT TTAGGAGCGA TTAAGACAGA ACGCGATATT
CAAAACATTG TTCTTAAATC AGAAAATGGA ATGCCCATTT TTGTTCGTGA CGTGGCAACC
GTAGAAATCA CGCCTCCTCC GCCAAGCGGC GTTATGGGGT ATACGGTTAC TCAGGACAAA
AAAGATGTAA GCAGTGGTGT TGAAGGTATT ATTCTTTTAA GGCGATATGA AAACCCAAGC
GAAGTTTTAA AATTGTTAAA AGAAAGAATG GCTGAGCTGC AGGAAAATGA TTTACCTCAA
GGCGTAAAAC TGCGTCCTAT GTACGACAGA ACATTCCTGA TTGATCATTC GCTTGAAACT
GTTGCACATA CCTTATTTGA AGGGATTTCG ATTGTAATTA TATTATTGAT TTTGTTTCTA
GGAAGTGTCC GAAGTGCATT GGTTGTAGCT TTAACGATTC CGTTTGCATT ATTGTTTGCT
TTTATTTTAA TGCGGCTTAC GGGTATTCCT GCCAATCTGC TTTCGCTTGG TGCAATAGAT
TTCGGAATTA TTGTAGATGG CGCTTGTTTG ATGGCAGAAC ATCTCATAAG GAAATACAGA
ACAGCTACAC CAGAAGAAAA ACAAGAAGGC ATTGTGCAAA TTACACTTCA GGCTGCTCAG
GAAGTTGGAA GAGAGATTTT CTTCTCGGTA ACAATTATTA TATTGGCCTA TATGCCAATA
CTTTTAATGA CTCGGGTAGA GGGAAAATTG TTTTCTCCGA TGGCTTTAAC TTTGGCTTTT
GCGGTTATCG GTTCAATGCT GGGAGCGCTT ACCTTTATTC CTGTCCTCAT TTCGTTTGTT
TACAGAAAGG CAATGCTCGA TGTAGATAAA CCCATAAAAG AACACAAAAA TGTGGTCTTG
GACTATTTAA CGAAATCATA CGAAAAAACA TTATCCGGAT TTTTAAATAA TTATAAAAAA
ACAACGATAA TTGGTTTCTC GATAGTAGCA GTATTTATTT TATGCGGCTT AAAATTAGGA
ACCGAATTTT TACCAACATT AGATGAAGGA TCGATCTTTT TAAGAGGAAA TTTTCCAGCC
GGAATTTCGA TACAGGAAAA TGCTAAATAT GCTCCTAAAA TCAGAAAAAT AATCGCGAAG
TATCCTCAAA TATCTTACGT AATAACACAA ACCGGACGTA ATGATGATGG TACCGATCCG
TTTCCTGCTA ATAGAAATGA AATTTTAGTG GGATTAAAAG ATTATAAACT CTGGAGCGAT
ACTATTGCTA AGAAAGATTT GGTCGAAATA ATTAAAAAAG ATCTGCAGCA GCAGATTCCA
TCAGTACAAT TTTCTTCAGG ACAGCCTATT ATTGATCAAG TTATGGAAAT TGTAAACGGA
AGTGCGGCAG ACCTGGCAGT TTCAGTCGTA GGCGATGATT TGGAAATGAT GAGAAAAAAA
GCAGAAACAA TTGCACAAAT TGCCAAAAAT ACGCAAGGAG CTGAGAATGT TAATATTGAA
CAAGAAGGAG AGCAAGAACA ACTGGCAATT GATATAAATA GGGAACAAGC GGCAAGATTC
GGAATTAATG TGGCTGATAT TCAAAATATG ATCGAAGTAG CAATTGGCGG TAAAACAGTT
TCAACCTTGT ATGATGGAGC AAAACGTTAT GATATTGTAG TTCGTTTTTT ACCGCAGTAC
AGAAACTCTA TTGATGCAAT AAAAGCTATT TTAGTACCAT CTTCAAATGG TGCATTAATA
CCAATGGATC AATTGGCAGA CATACATTTT GTTGAAGGGC AGACTAATAT TTATCGTTAC
GGCAGTAAAC GCATGATTAC TGTTAGAACC AATATCAGGG GAAGGGATCA GGGAAGTTTT
GTAAAAGAAT TACAAGCAAA AGTAGATAAA AATGTTACCG TGCCTAAAGG ATACAGCATC
ATTTACGGAG GACAATATGA AAATCTGGAA CGAGCAGGAA AACAATTAGC ATTCACTATT
CCATTAACAA TTATTATGGT TTTTTTATTC CTGTTTATGC TGTATAAAAA TTTTCAGCAT
ACTATGATTA CCATGAGTTG TATTTTGTTT GCTCTTGGTG GCGGTATTAT GGCTTTACTT
ATTAGAGGTT ATTACTTTAA TGTTTCTGCA GGTGTTGGTT TTGTGAGCAT TTTTGGAATT
TCAGTAATGT CGGGAGTACT GCTTGTATCG GCTTTAAATA GAAAAACATT ATTTAAGAAT
GATAATCTGC AGGAAAATGT ACTAACGGCT TCAAAAGAGC AGTTAAGAGC CTTGTTGTCG
ATTCTGGTTG TGGCTATTGT TGGTCTTATA CCTGCGGCTA CATCTTCAGG AATTGGTTCA
GATGTGCAGC GACCGCTTGC AACGGTAATT ATAGGCGGAT TGACTAGTAC ATTATTTTTT
GCTCCAATAC TGATTCCTCC TTTATATTTT TGGATGAACG AGAGAAAATG A
|
|---|
| Protein sequence | MIKNLLIFSL RNRWVIIAIN LVLMAVGFWC FTKLKIEAYP DIADTNVIIV AQYDGRAAEE
VEQQVTVPIE RALQNTPNVL DRRSRTIFGL SVVQLTFKDG TDDYFARQQV TERLTEAELP
DGVTPSLAPL STAVGEIFRY VVEAPSNYSQ AELRDLQDWV IKPALLQVPG IADVTTFGGP
LKQFHIITSP EKLRKYNLTL QNVMDAVDAN NQNTGGNIIE RGGQGFAVRG LGAIKTERDI
QNIVLKSENG MPIFVRDVAT VEITPPPPSG VMGYTVTQDK KDVSSGVEGI ILLRRYENPS
EVLKLLKERM AELQENDLPQ GVKLRPMYDR TFLIDHSLET VAHTLFEGIS IVIILLILFL
GSVRSALVVA LTIPFALLFA FILMRLTGIP ANLLSLGAID FGIIVDGACL MAEHLIRKYR
TATPEEKQEG IVQITLQAAQ EVGREIFFSV TIIILAYMPI LLMTRVEGKL FSPMALTLAF
AVIGSMLGAL TFIPVLISFV YRKAMLDVDK PIKEHKNVVL DYLTKSYEKT LSGFLNNYKK
TTIIGFSIVA VFILCGLKLG TEFLPTLDEG SIFLRGNFPA GISIQENAKY APKIRKIIAK
YPQISYVITQ TGRNDDGTDP FPANRNEILV GLKDYKLWSD TIAKKDLVEI IKKDLQQQIP
SVQFSSGQPI IDQVMEIVNG SAADLAVSVV GDDLEMMRKK AETIAQIAKN TQGAENVNIE
QEGEQEQLAI DINREQAARF GINVADIQNM IEVAIGGKTV STLYDGAKRY DIVVRFLPQY
RNSIDAIKAI LVPSSNGALI PMDQLADIHF VEGQTNIYRY GSKRMITVRT NIRGRDQGSF
VKELQAKVDK NVTVPKGYSI IYGGQYENLE RAGKQLAFTI PLTIIMVFLF LFMLYKNFQH
TMITMSCILF ALGGGIMALL IRGYYFNVSA GVGFVSIFGI SVMSGVLLVS ALNRKTLFKN
DNLQENVLTA SKEQLRALLS ILVVAIVGLI PAATSSGIGS DVQRPLATVI IGGLTSTLFF
APILIPPLYF WMNERK
|
|---|
| |