| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4442 |
|---|
| Symbol | |
|---|
| ID | 5093957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 5363862 |
|---|
| End bp | 5364614 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644743863 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001196765 |
|---|
| Protein GI | 146302174 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAT TAAACAACAA AACAGCAGTA ATTACAGGCT CAGTTAGAGG ATTAGGAAAA
GCAATTGCAG AAAGATATGC TGCAATGGGT GCAGACATCG TAATTAATTA TTCGAAAGAC
AAAGCTTCGG CAGATGCGGT TTTAAGCACT ATTAAAGCAA TGGGGGTAAA AGCAATTGCT
GTTCAGGCTG ATGTGAGCAA AGTGGCCGAT TTGGAAAGAT TGTTTGCTGA GGCAAAAGCG
GCATTTGGAA AAATTGATAT TGTAGTGGCC AATGCAGGAA TCGAAATGGT AGAAGTTCCT
GTTACTGAAT TTACAGAAGA ACAATTTGAT AAAGTATTTT CTATTAATAC TAAAGGAACT
TATTTTACGC TTCAGCAGGC TGCGAAACAC ATTGAAGATA ACGGTAGAAT TATTTACATC
GCTTCGAGTA CTACTTCTTT CCCCGTTCCC GGAATGGCTG TTTACGGAGG AAGCAAAACT
ACGCCAAGAT ATTTAGTCGA TATTTTATCT AAAGAAATAG GACATCGAGG TGTAACAGTG
AACTCAATTA TCCCATTTGC TGTAGATCAC TCAGGAATAT TTGCAGAGGC AGACAGCTAT
CCGGAACTAA GAAAACAATT GTTAGACAGC TGCCCGATGA GACGATTGGC AGAAGTGGAA
GACGTAGCAA ATGCGGCTGA ATTTTTCGCA AGTGATTTAT CTTCTTTTGT AAGCGGACAA
CACTTATTGG TAAATGGCGG AGCTACAAAC TAA
|
|---|
| Protein sequence | MKKLNNKTAV ITGSVRGLGK AIAERYAAMG ADIVINYSKD KASADAVLST IKAMGVKAIA
VQADVSKVAD LERLFAEAKA AFGKIDIVVA NAGIEMVEVP VTEFTEEQFD KVFSINTKGT
YFTLQQAAKH IEDNGRIIYI ASSTTSFPVP GMAVYGGSKT TPRYLVDILS KEIGHRGVTV
NSIIPFAVDH SGIFAEADSY PELRKQLLDS CPMRRLAEVE DVANAAEFFA SDLSSFVSGQ
HLLVNGGATN
|
|---|
| |