| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4381 |
|---|
| Symbol | |
|---|
| ID | 5091649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 5287751 |
|---|
| End bp | 5289739 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644743805 |
|---|
| Product | Type IV secretory pathway VirD4 components-like protein |
|---|
| Protein accession | YP_001196707 |
|---|
| Protein GI | 146302116 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0399338 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACGG GAGAAAATGA ACAGGCGCTT AGAAAAATTT TAGATATGAC TAGACTGATG
GGCATCGCAG TGCTGCTCAT CCATTTTTAT TATTACTGCT TCGATTCCTT CATGCATTGG
AATCTTGCTC CGGATTTTGC CTGCAGGATA CTGGAAAATA TTTATCGTAC GGGGCTTCTG
GACAGCTTCC ATAAATCTAA ACTTTTTGCA CTTGGACTCT TGGTTATTTC CCTTATGGGT
GCCAGAGGAA GAAAAGATGA AAAGCTTCAT TTTAGAACTG CTTTTAATTA TATCTCATTG
GGTCTCCTGC TTTACTTTGG ATCCTATCCG GCTATTCTAA TCTTTTTGGA TCCTGAGGTC
TGCTCCGTAC TATATATCTC ACTGTGTTCT TTGGGCTATC TGATGACACT TTCCGGGGGC
ACCCTGCTCT CCCGCATTAT CCGCAGAAAG CTGGGTTCAG CAGATATATT CAATAAGGAA
AACGAAACTT TCCCTCAGGA GGAAAGGCTT ATTGAAAACG AATATTCAGT TAACCTTCCC
GCCCGTTATC ACCTCAAAGA CAAAGTGCGC AGCAGCTGGA TTAACATTAT AAATCCCTTT
CGAGGCATTC TGGTTCCAGG CACGCCGGGT TCGGGAAAAT CATACTTTGT GATCCGCCAT
ATAATCACCC AGCATATTGC CAAGGGCTTT TCCATGTTCA TCTATGATTT CAAGTTTGAC
GACCTCACCG TTATCGCCTA TAATGCCTGG CTGAAATTCC GTCATCTTTA TGCCGTGGAG
CCCAAATTTT ACATCATAAA TTTTGACGAC CTCTCCAGAA CCCACCGTTG TAATCCTCTT
GATCCTGCGG CAATGACAGA CATTACCGAT GCTGCTGAAT CTGCCCGCAC AATCCTTATG
GGACTCAACC GGGAGTGGAT TAAAAAACAG GGCGATTTCT TTGTGGAATC CCCTATAAAT
TTCCTGACGG CCGTCATCTG GTACCTTCGT AAATACAACG ATGGCGAGTT CTGCACCCTG
CCACATGTCA TTGAAATGAT CCAGACCGAC TATGAAAGCC TTTTCACGAT TCTGAGAACA
GAAAAAGAGA TCGAAGTGCT TATCAATCCC TTTGTCAGCG CATTCCTGAA TGAGGCAGTC
GACCAGCTGG AGGGTCAGAT TGCGTCGGCT AAAATCTCGC TGGCGAAACT CTCCTCTCCT
CAGCTTTACT ACGTGCTCTC GGGCAGTGAT TTTACCCTTG ACATTAATAA TCCATCTGAT
CCAAAAATTG TTTCAATGGG GAACAATCCG CAGAAAATAC AGACATACGG GGCAGTCCTT
TCCCTTTTTG TCAGCCGTCT TATCAAACAG GTAAACCAGA AGGGAAAGCT TAAAAGCAGT
CTCATTTTTG ACGAGTTCCC CACCATCTAT CTCAATAATA TTGACAGTCT GATTGCAACG
GCAAGAAGCA ACAAAGTGAG CACCTGTCTT GGAATTCAGG ACTTCAGCCA GCTTCGCAAG
GACTACGGCC GCGAGCAGGC TGATGTGATC ATTAATATAG TCGGAAATAT TGTCTGCGGA
CAGGTCAGCG GAGATACGGC CAAACAGCTC TCAGAGCGTT TCGGAAAAAT AATGCAGGAC
CGCGAAAGCT TATCAATAAA CAGCAGCGAC ACCTCCATCA GCCGTTCCCG ACAGCTGGAA
TCCGCAGTGC CGCCTTCGAA GATTTCTTCG CTGAGTTCGG GAGAATTTGT AGGCATGACA
GCCGATAACC CGGACTGCAG AATTGAGCTT AAAACTTTTC ACTGCGAGAT CATCAACGAC
CACGAAAAAA TTAAAAAAGA AACAGATAAT TACAAAGAAA TTCCAATCAT ACGGACAATT
GATAATGTTA TCATCCAGAA AAATTATCTT CAGATAAAAA TTGAGATTCA GGAAATAATC
CACAGTGAAA TGGAACGGAT AATCAAAAGC CCGCAGCTTT CATCACTGGT TCTCAAAAAA
GAAAAATAA
|
|---|
| Protein sequence | MQTGENEQAL RKILDMTRLM GIAVLLIHFY YYCFDSFMHW NLAPDFACRI LENIYRTGLL
DSFHKSKLFA LGLLVISLMG ARGRKDEKLH FRTAFNYISL GLLLYFGSYP AILIFLDPEV
CSVLYISLCS LGYLMTLSGG TLLSRIIRRK LGSADIFNKE NETFPQEERL IENEYSVNLP
ARYHLKDKVR SSWINIINPF RGILVPGTPG SGKSYFVIRH IITQHIAKGF SMFIYDFKFD
DLTVIAYNAW LKFRHLYAVE PKFYIINFDD LSRTHRCNPL DPAAMTDITD AAESARTILM
GLNREWIKKQ GDFFVESPIN FLTAVIWYLR KYNDGEFCTL PHVIEMIQTD YESLFTILRT
EKEIEVLINP FVSAFLNEAV DQLEGQIASA KISLAKLSSP QLYYVLSGSD FTLDINNPSD
PKIVSMGNNP QKIQTYGAVL SLFVSRLIKQ VNQKGKLKSS LIFDEFPTIY LNNIDSLIAT
ARSNKVSTCL GIQDFSQLRK DYGREQADVI INIVGNIVCG QVSGDTAKQL SERFGKIMQD
RESLSINSSD TSISRSRQLE SAVPPSKISS LSSGEFVGMT ADNPDCRIEL KTFHCEIIND
HEKIKKETDN YKEIPIIRTI DNVIIQKNYL QIKIEIQEII HSEMERIIKS PQLSSLVLKK
EK
|
|---|
| |