| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4278 |
|---|
| Symbol | |
|---|
| ID | 5090614 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 5168483 |
|---|
| End bp | 5169406 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 644743702 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001196605 |
|---|
| Protein GI | 146302014 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCTT TAGATTCATT TTACCAGGAT ATTACCGAAG GTTCAACAGT AGAGCCCACT
TCCCTATTAC CAAACGACAT TCAAAAAGAG ATTGGCCATT TTAATGTTTT TGATATTAAA
GAACTTCTGG AACGTATGAA AGGAAAGCCT GGAATGCCTT ATGACAGAAG AGCTTATTAC
AAAATAAGTT TGATTAGAGG GAAAAACAGA GCCGAATATG CTGATAAAAT AATCGACATT
GAAAAACAGG GATTGTTATT TGCAACTCCA AAAATTCCCT ACAATTATTT ACCGCAGGAT
ACCAATCAGG GCGGACAGTT TTGTGTATTT ACAAGCGAGT TTTTATCTAA AAGTAAAAGC
GGTATTGATT TAGACGAACT TCCAATTTTT GCTTCAGACG GTTATCCTAT TTTTCAGTTA
TCAGATGAAG AAGTCGAAGA AGTTGCTTTG ATTTTCAAAA AGATACAAAA AGAAATCAAT
TCTGATTATA TTTATAAATA CGATTTAATC CGAAATTATG TCGCTGAATT AATTCATTTC
GGACAAAAAT TGCAGCCTAT AACAGCACTT TATTCTAAAC ACAATTCGGC AGCAAGAGTT
TCGTCTTTAT TTGCCGAATT ATTAGAAAGA CAATTTCCTA TAGAATCGCC AAATCAACGT
TTAGAACTAA GAACTGCGAA GGATTTTGCA GAACGATTAT CGGTTCACGT CAATCATTTA
AATAAAGTTT TAAAAGAAAA CACTGGAAAA ACCACAACCG AATTAATCAG TACCAGATTA
ACAAACGAAG CAAAAATACT TTTAAAGCAG ACAGACTGGA ATATTTCTGA AATCGCCTAT
TCGCTTGGTT TTGAAGAATT AGCACATTTT TCAAACTTCT TTAAAAAACA AACTTCTTAC
ACGCCGATTG CTTTTAGAGC TTAA
|
|---|
| Protein sequence | MKSLDSFYQD ITEGSTVEPT SLLPNDIQKE IGHFNVFDIK ELLERMKGKP GMPYDRRAYY
KISLIRGKNR AEYADKIIDI EKQGLLFATP KIPYNYLPQD TNQGGQFCVF TSEFLSKSKS
GIDLDELPIF ASDGYPIFQL SDEEVEEVAL IFKKIQKEIN SDYIYKYDLI RNYVAELIHF
GQKLQPITAL YSKHNSAARV SSLFAELLER QFPIESPNQR LELRTAKDFA ERLSVHVNHL
NKVLKENTGK TTTELISTRL TNEAKILLKQ TDWNISEIAY SLGFEELAHF SNFFKKQTSY
TPIAFRA
|
|---|
| |