| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4215 |
|---|
| Symbol | |
|---|
| ID | 5093845 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 5066012 |
|---|
| End bp | 5068153 |
|---|
| Gene Length | 2142 bp |
|---|
| Protein Length | 713 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644743634 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001196542 |
|---|
| Protein GI | 146301951 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3347] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.252283 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATA CAAAAACAAT TAATACAAAT TTTAAGCACG TAAGCTACCT TTGGGATGAT
GCTAAAGCCG CAGAACTATC GGGAGATGAA GTAGCGCTTT TCATTTATCG TTCTAATTTA
TTAGGAGCCG ATTTAAGACT GACAAACTAT GGAGGAGGAA ATACTTCTGT AAAAATTACT
GATAAAGATC CTTTAACAGG AGCAAGCTCA GAAGTTATGT GGATTAAAGG TTCTGGAGGA
GATATTGGAA CTTTAACAAA ATCTGGCTGT GCGGCTTTGT ACTTAGACAG ACTTCGTAAT
CTTGAAAATG TTTACAGAGG AATTGAGTTT GAAGATGAAA TGGTAGAATT GTTCAACCAC
TGTATTTTCG ATTTAGCTTC AAAAGCACCT TCTATCGATA CACCTTTACA CGGTTTTCTT
CCATTCAAAC ATATCGATCA CTTGCATCCT GATGCGGCAA TTGCAATTGC TGCTGCAAAA
GACGGAGCAA AAATTACTGA AGAATTATTT GACGGAGAAA TTGGCTGGGT AGGCTGGCAG
CGTCCGGGCT TTGACTTAGG ACTTCAGTTA AGAAGCTGTT TAGAAGAAGC TGAAAAGAAA
GGCAAAAAAC TAAGAGGAAT CATGTTAGGT TCTCACGGTT TATTTACCTG GGGAGATACA
GCATACGAAA GCTACATCAA CACATTAGAA GTAATCGAAA AATGTGCTGA ATATTTAGAA
AGCAACTACG GAAAAAAACG TCCGGTTTTT GGAGGACAAA AAATTGAAAG TCTTCCAGAA
GCAGATAGAA AATTAAAAGC TGCAAAAGTG GCTCCAATTT TAAGAGGTTT CTGTTCATCA
GAACGTCAAA TGATTGGACA TTATACAGAT GATGCAAGAG TATTGGAATT TATCAATTCT
AATGATCTTT CAAAATTAGC TCCATTAGGA ACATCTTGTC CGGATCACTT TTTAAGAACT
AAAATCAGCC CGCTGGTTTT AGAATTAGAT CCAAACGAAG ATTTATCAGA TGTTGATGCG
GTTAAAGCAA AACTGGCTCC GGCTTTTGAA GCTTACCGCG CAATGTACAA AGACTATTAT
AATGCCTGCA AGAAATCAAA TTCTCCTGCA ATGCGTGACC CAAATCCGGT TGTGATTTTA
TATCCTGGAG TGGGAATGTT CACTTTTGCA AAAGATAAAA CAATGGCACG TCTGGCATCA
GAATATTATG TAAATGCAGT AAACGTTATG AAAGGCGCTG AAGCCGTTTC AGAATATACT
TCACTGCCTC ATCAGGAAGC TTTTGATATT GAATATTGGT TATTAGAAGA AGCAAAATTA
CAACGCATGC CAAAACCAAA AGCATTGTCT GGAAGAGTAG CTCTTATTAC AGGTTCTGCG
GGTGGAATTG GGAAAGCTAT CGCTAAAAAA TTCGCTCAGG AAGGTGCTTG TGTTGTAATC
AATGATATCA ACGAAGAGCG TTTAGAAGGT GCATCTGCTG AGTTTGTTAA AGCATTTGGT
AAAGATGCAG TTTCAAGCAC TTTATTAAAT GTTACTGACG AAGCAAGTAC AGAAAAAGCA
TTGGACGAAG CTTCTTTAGC TTTTGGAGGT GTTGACATTG TAGTAAACAA TGCCGGAATC
AGTATTTCGA AATCTATTGC AGAACATACT CTGGAAGAAT GGGACAGATT ATACGATATC
TTGGTTAAAG GACAATTTAT TGTTTCTAAA GCCGGAATCG AAGTAATGCG TAAACAAGGT
TTTGGAGGTG ATATCGTAAA TATCGTTTCT AAAAATGCTG TTGTGGCTGG TCCAAATAAC
CCTGGTTATG GTTCAGCAAA AGCTGCACAG GCGCACTTAA CACGTTTAAT GGCTGCAGAA
CTTGGAGCTG ATAAAATTCG TGTAAATACA GTAAATCCTG ATGCTGTAAT TTCAGACTCA
AATATTTGGT CTGGAGGATG GGCAGAAGGC CGTGCAAAAG CATACGGAGT TACAGTAGAA
GAACTTCCGG CTTATTATGC AAAACGTACG TTATTAAACG AAATCATATT GCCGGATGAT
ATTGCAAATG CTTGTTTTGC TTTTGTTGGA GGTTTACTTG GTAAATCTAC AGGAAATGCG
CTAAACGTAG ACGGCGGTGT TGCAATGGGC TTTTATAGAT AA
|
|---|
| Protein sequence | MSNTKTINTN FKHVSYLWDD AKAAELSGDE VALFIYRSNL LGADLRLTNY GGGNTSVKIT
DKDPLTGASS EVMWIKGSGG DIGTLTKSGC AALYLDRLRN LENVYRGIEF EDEMVELFNH
CIFDLASKAP SIDTPLHGFL PFKHIDHLHP DAAIAIAAAK DGAKITEELF DGEIGWVGWQ
RPGFDLGLQL RSCLEEAEKK GKKLRGIMLG SHGLFTWGDT AYESYINTLE VIEKCAEYLE
SNYGKKRPVF GGQKIESLPE ADRKLKAAKV APILRGFCSS ERQMIGHYTD DARVLEFINS
NDLSKLAPLG TSCPDHFLRT KISPLVLELD PNEDLSDVDA VKAKLAPAFE AYRAMYKDYY
NACKKSNSPA MRDPNPVVIL YPGVGMFTFA KDKTMARLAS EYYVNAVNVM KGAEAVSEYT
SLPHQEAFDI EYWLLEEAKL QRMPKPKALS GRVALITGSA GGIGKAIAKK FAQEGACVVI
NDINEERLEG ASAEFVKAFG KDAVSSTLLN VTDEASTEKA LDEASLAFGG VDIVVNNAGI
SISKSIAEHT LEEWDRLYDI LVKGQFIVSK AGIEVMRKQG FGGDIVNIVS KNAVVAGPNN
PGYGSAKAAQ AHLTRLMAAE LGADKIRVNT VNPDAVISDS NIWSGGWAEG RAKAYGVTVE
ELPAYYAKRT LLNEIILPDD IANACFAFVG GLLGKSTGNA LNVDGGVAMG FYR
|
|---|
| |