| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4112 |
|---|
| Symbol | |
|---|
| ID | 5094022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 4940166 |
|---|
| End bp | 4941746 |
|---|
| Gene Length | 1581 bp |
|---|
| Protein Length | 526 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644743531 |
|---|
| Product | SSS family solute/sodium (Na+) symporter |
|---|
| Protein accession | YP_001196439 |
|---|
| Protein GI | 146301848 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4146] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0592432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCA TCTACGATAA ATTAACCACG CTCGATTTTG TAATTGTAGC GGGTTATTTG
GTGGCTTTAT TGGTCATTGG ATATGTGGTA AGTATGAAGC AGAGAAATAA AAACGAAACG
CTTTTTCTGG CCGGAAATTC ATTAAACTGG TACAGCATCG GGTTTAATAT GTGGGGAACC
AACGTTGGGC CTTCGTCATT ATTGGCTTTT GCGAGTATTG GTTACGCTAC GGGAATTGTA
GCGGGAAATT TCGAATGGTA CGCATTTGTG TTTTTACTGC TTTTGGCAAT GGTTTTTGCA
CCAAGATATA TTGCGAGTAA AGTCAGCACA ATGCCTGAAT ATATGGGAAA ACGCTACGGC
GATAGTACGC AGAATATTTT GGCTTGGTAT GCTTTGGTAA AAATATTAGT AAGCTGGTTG
TCTTTAGGAT TATTCAGCGG AGGCGTTTTA GTACGTCAGA TTTTGGGAAT TCCAATGTGG
CAGAGCGTTA CGGTTTTAGT AATTTTCTCT GGAATATTTA CGTTTGCTGG AGGATTAAAA
GCGATTGCAA AAGTGAATGT TTTTCAAATG ATTCTGCTGA TTGTCGTTTC GCTTACACTT
TCCTTTCTAG GCTTGCAGAA ACTAGGCGGA ATCGATGTTT TAATCGCCAA AACACCTTCT
AATTTTTGGA ATTTAGTCCG TCCTTCAGAT GATGCGCATT ATCCGTGGCC TGCTATTTTG
TTGGGATATC CTGTTGCTGC AGTTGCTTTT TTCTGTACCG ATCAATCGAT GGTGCAGAGT
GTTTTAGGTG CGAAAAACCT AGAGCAGGGA CAATTAGGAG TAAACTTTAT AGGATGGTTA
AAAGTGATGG CGTTGCCGTT GTTTATTCTT CCCGGAATTT TGTGTTATGC CTTATATCCA
GAATTAGGAA GCAATTCTGA TTTGGCTTAT ATGACAATGG TTACGAATCT TTTCCCAAGC
GGAATGAACG GTTTGGTAAT CTGTGTTATG ATTGCGGTTT TGGTGGGAAC AATTGGTTCT
TCGTTAAACG CTTTGAGCAC CGTTTTTACG AATGATATTT ATGTAAAGAA AATAAACCCG
ACGGCGACGA TTCAGGATCA GATTAAAATT GGACGCTTAA CAATTGCTGC TGGATGCGTT
TTTGCGATTT TAATCGCCGT TGCGATAGAC AATATCAAAG GGCAGAATTT ATTCAACATT
TTTCAGGCAG TTTTAGGTTT CCTGGCGCCT TCGTTATCTG TTGTTTTCCT TTTGAGTGTT
TTCTGGAAAC GCACCACTAA AAAAGCCGTA AATGCAACGC TTTCTTGGGG TTCTGCATTT
AGTTTGTTTG TTGGAGTTTT ATATTTATGG ATTTTCCCTG CCGATAAATA TCCAGTTTGG
CCTCACTTTT TATTGATTTC GTTTTACATT TTTGCGGTGC TTTTAATTAC AGCCGTTATT
ATTTCTTTAA CCGATAAAAA CCCTGAAGTT AATGTTTCAG ATGAAACGGA TATTCCTAAA
ACTAGCAAAA AGGTGAAGCT TTTGTTTGGT TTGCTGGGAT TGACAATTTT GGTTTTGTAT
TTGGTTTTTA ATGGAAATTA A
|
|---|
| Protein sequence | MNSIYDKLTT LDFVIVAGYL VALLVIGYVV SMKQRNKNET LFLAGNSLNW YSIGFNMWGT
NVGPSSLLAF ASIGYATGIV AGNFEWYAFV FLLLLAMVFA PRYIASKVST MPEYMGKRYG
DSTQNILAWY ALVKILVSWL SLGLFSGGVL VRQILGIPMW QSVTVLVIFS GIFTFAGGLK
AIAKVNVFQM ILLIVVSLTL SFLGLQKLGG IDVLIAKTPS NFWNLVRPSD DAHYPWPAIL
LGYPVAAVAF FCTDQSMVQS VLGAKNLEQG QLGVNFIGWL KVMALPLFIL PGILCYALYP
ELGSNSDLAY MTMVTNLFPS GMNGLVICVM IAVLVGTIGS SLNALSTVFT NDIYVKKINP
TATIQDQIKI GRLTIAAGCV FAILIAVAID NIKGQNLFNI FQAVLGFLAP SLSVVFLLSV
FWKRTTKKAV NATLSWGSAF SLFVGVLYLW IFPADKYPVW PHFLLISFYI FAVLLITAVI
ISLTDKNPEV NVSDETDIPK TSKKVKLLFG LLGLTILVLY LVFNGN
|
|---|
| |