| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_4008 |
|---|
| Symbol | |
|---|
| ID | 5091502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 4790561 |
|---|
| End bp | 4792240 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644743429 |
|---|
| Product | circadian clock protein KaiC |
|---|
| Protein accession | YP_001196337 |
|---|
| Protein GI | 146301746 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0467] RecA-superfamily ATPases implicated in signal transduction |
|---|
| TIGRFAM ID | [TIGR02655] circadian clock protein KaiC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.376445 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCAGGAAA AAACAAAATC ACATCATTTT ATATTCCCAA AGACTCCTAC GGGCGTTGAC
GGACTAGACG AGATTACAGA AGGTGGTTTC CCAAAAGGGC GCCCTACTTT AATCTGCGGT
GGTGCCGGCT GTGGAAAAAC ACTAATGTCA ATGCAGTTCC TTATTAAAGG AATTACAGAT
CATAATGAAA ACGGAGTTTT CATGTCCTTT GAAGAACCTT CAGATGATCT TACTTTAAAT
GTAAAATCTC TTGGTTTTGA CCTTGAGCAG CTTAAAAAAG ATAAAAAGCT TGTAGTAGAT
CATGTTCGCG TAGAAAGATC AGAAATTGAA GAAGCGGGAG AATACGATCT TGACGGCTTA
TTTATACGAT TAGGTCATGC GATCGATTCT ATAAAAGCAA CCCGTGTTGT TCTGGATACC
ATCGAATCTT TATTTGCAGG TCTTGACAAT CAGGCAATAC TGAGAGCCGA ATTACGAAGA
TTATTTCATT GGCTTAAAAC AAAAGGCGTT ACAGCGGTTA TTACAGGCGA ACGCGGCGAA
GCAACCTTAA CCCGTCAGGG ATTAGAAGAA TACGTTTCTG ACTGTGTTAT TGTTCTCGAT
CATCGTGTTA TAGAGCAGGT TTCGACCAGA AGACTCCGCA TTGTAAAATA CAGAGGTTCT
ACACACGGAA CAAACGAATA TCCGTTTTTA ATTGATGAAG AAGGTATTTC GGTACTTCCT
ATTACATCAT TAAAACTCGA TAACGAAGTT TCATCTGATA TTATTTCTAC AGGAGTTCCC
GGATTAAACG AAATGTTTAA CAGCGGCGGA TTCTATCGCG GAAGCAACAT TTTAATATCT
GGAACTGCCG GAACAGCAAA AACTACCGTT GCCTGCTATT TTGCCAACGA ACAATGCGAA
AAGAACGAAA AAACGATTTA TTTCGCTTTC GAAGAATCAC CGCATCAATT GGTTCGCAAC
ATGAAATCAA TTGGTATTGA TCTCGATAAA CACATCAAAA AAGGCATTTT GCAAATACAC
TCTTCACGTC CGTCGTTAAA CGGTCTTGAA CTGCATTTGC TTACCCTTCG CAAAATGATA
AAAGAATTTG CACCAACCAC TATTATTATT GATCCTATTA GTAACCTTAT TTCGGTAGGA
AGCGAACACG AAGTTCGTTC TATGCTCGTA AGGTTGATTG ATATGCTAAA AGCCAATAAT
ATTACGGCGA TGTTTACGTC TTTAAACAAA CAAACGGACA ATTTCAGACC AGATTTGGCC
GAAGAATCTG TATCGTCACT AGTCGATACC TGGATTACCG TTCGTGATAT GGAAGGCGTT
GGCGAAAGAA ACCGCGGCAT TTTTATTATC AAAGCCAGAG GAATGGGACA TTCTAACCAG
GTCAGAGAAT TTGTGATCAC TAATAAAGGA ATTGAATTAT TGGATGTAGA ATTAGGTCCA
CAGGGAATCC TAACCGGAGC AGCCAGAAAA TCACATCAGT TTAAGAAAAC CATTTCTGAT
ATTAAGCTGC AAAATGAAAT CAGCCGAAAA GACAGAGAGA TTGAACGCAA ACGCAAAGTT
CTTGAAGCCA ATATTGAAGC GTTGAGAACC GAATTTGAAT CGGCAGAAGA AGAACTGAGT
ATCCTTAAAG CAACAGAAGA ATTGCAGGAA AAACTGTCTT CTAAGAAAAA AGAAAATTAA
|
|---|
| Protein sequence | MQEKTKSHHF IFPKTPTGVD GLDEITEGGF PKGRPTLICG GAGCGKTLMS MQFLIKGITD
HNENGVFMSF EEPSDDLTLN VKSLGFDLEQ LKKDKKLVVD HVRVERSEIE EAGEYDLDGL
FIRLGHAIDS IKATRVVLDT IESLFAGLDN QAILRAELRR LFHWLKTKGV TAVITGERGE
ATLTRQGLEE YVSDCVIVLD HRVIEQVSTR RLRIVKYRGS THGTNEYPFL IDEEGISVLP
ITSLKLDNEV SSDIISTGVP GLNEMFNSGG FYRGSNILIS GTAGTAKTTV ACYFANEQCE
KNEKTIYFAF EESPHQLVRN MKSIGIDLDK HIKKGILQIH SSRPSLNGLE LHLLTLRKMI
KEFAPTTIII DPISNLISVG SEHEVRSMLV RLIDMLKANN ITAMFTSLNK QTDNFRPDLA
EESVSSLVDT WITVRDMEGV GERNRGIFII KARGMGHSNQ VREFVITNKG IELLDVELGP
QGILTGAARK SHQFKKTISD IKLQNEISRK DREIERKRKV LEANIEALRT EFESAEEELS
ILKATEELQE KLSSKKKEN
|
|---|
| |