| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3932 |
|---|
| Symbol | |
|---|
| ID | 5090162 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 4682269 |
|---|
| End bp | 4683399 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 644743353 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_001196261 |
|---|
| Protein GI | 146301670 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.772133 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTT ATATAACAGC TGTTTTATGT CTTGTTTTGA TGATATCATG CAAAAGTGAT
AAAAAAGAAG AACAAAAAAC TGAAGTACAA AAACAGGAAA ACACAATTGA GTTAAGCGAT
TCGCAGGTAA AAAACGCCAG ATTGGCAACA GGAAATCCTG AGGAGAAAAA TGTAAAAGGA
ATTTTAGAAC TGCAGGGAAC CGTTACGGTG CCTCCCAAAA GTGTAGTGAG CGTAAGTATT
CCGTTAGGCG GCTACATTAA AAAAACCGAT TTAATGGCCG GAATGCATGT TAGAAAAGGG
CAGTTATTGG CTGTAGTGGA AGATATGCAG TACATTCAGC TGCAGCAGGA TTATTTAACT
GCAAAAGAAA AATACCAGCT GTCTCAAAGT GAATATAACA GACAAAAAGA ATTGAATGCA
AAAAAAGCAA GCAGTGATAA ATTGTTTGAA CAAACTGCTG CAGAAATGCA GACACAGCGT
ATTTATATGG CATCGCTTGC ACAAAAACTT TCTTTGTCAG GAATTAATGT AAAAACATTA
TCGGCATCTA ATATCAGTAA AACGGTTTCG GTTCTTTCGC CCATAACCGG TTTGGTTTCT
AAAGTAAATG TAAACGTTGG AAAATATATT TCTCCTACTG ATATGCTTTT TGAATTAATG
GAAACCAGCG ATGTAGTTTT GGTTATGAAT GCTTTTGAAA AAGATGTTCA TCTGCTTTCT
GTTGGGCAGA CTGTTTCTGT TTTTACCAAT GCCGATCCTT CAAAAAAATA TGCAGCAAAA
ATTGCCTACA TCAATCAAAG TCTTAACGGA GACCGTGCCG CCGAAGTTGT CTGTAAATTG
AATGCATACA ACAATGCATT AATTCCCGGT TTATTTATTA ATGCCGAAGC TGAATTTGAA
AACGAAAAAA CGCTTACAGT TCCGGAAGAT GCAATTGTAA AATGGCAGAA TAAGTTTTAT
GTTTTTTCAA ATACTGAAAA CCAAAAATAC AAAATGATTC CGGTAGAAAC GGGAAGTTCT
AGTAATGGAT ACCGACAGAT TAAATCATCT TTAATAGATA AATCCTCAAA AATTGTAGTC
AAAAATGCTT ACACGCTTTT AATGACCTTT ATGAATGGAG GCGATAATTA A
|
|---|
| Protein sequence | MKTYITAVLC LVLMISCKSD KKEEQKTEVQ KQENTIELSD SQVKNARLAT GNPEEKNVKG
ILELQGTVTV PPKSVVSVSI PLGGYIKKTD LMAGMHVRKG QLLAVVEDMQ YIQLQQDYLT
AKEKYQLSQS EYNRQKELNA KKASSDKLFE QTAAEMQTQR IYMASLAQKL SLSGINVKTL
SASNISKTVS VLSPITGLVS KVNVNVGKYI SPTDMLFELM ETSDVVLVMN AFEKDVHLLS
VGQTVSVFTN ADPSKKYAAK IAYINQSLNG DRAAEVVCKL NAYNNALIPG LFINAEAEFE
NEKTLTVPED AIVKWQNKFY VFSNTENQKY KMIPVETGSS SNGYRQIKSS LIDKSSKIVV
KNAYTLLMTF MNGGDN
|
|---|
| |