| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3769 |
|---|
| Symbol | |
|---|
| ID | 5089801 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 4465930 |
|---|
| End bp | 4468986 |
|---|
| Gene Length | 3057 bp |
|---|
| Protein Length | 1018 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644743191 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_001196099 |
|---|
| Protein GI | 146301508 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCTCA ACTGCCACTC TTTCCACTCG CTGCGTTACG GCACTATTCC GGTTGAGGAA
TTGGTGCAGC TGGCTGTGTC GCTGGGTGTT CAAGCCATGG CCCTGACCGA TATCAATACT
GTGACAGGGA TTTACGATTT CATAAAACTA TGCAATACAG CCGGCATAAA GCCCCTTATA
GGTATGGAAT TTCGCTGCCG GCACCAGCTG CATTATATCG GACTGGCAAA AAATACGCAG
GGACTTGCGG GAATGAACCG CTTTTTGACC GGCCATAATT TTGACGGAAC TCCCCTGCCA
TTGCATGCTC CTGAGATTGC AGATGCTTTC TTTATTTATC CCCTTGAAAA TACGCCCCAG
GTGTTAAGAG AGAATGAATA TATCGGCATC CAGCCTGAAG AACTGCAAAA ATTGGTATTG
TCTGAATGGA AGGACAGACA GCATAAAATG GTGGTGCTCC AGCCGGTAAC TTTCCGCTCC
AAAACCGAAT ACCAGCTTCA TAAAATTCTG CGTGCCATAG ATCTGAATGT TTTAGGCTCC
AGGCTTAAAC CTGAAGACTG CTGCAGGGCG TCTGATACAA TGATGCGGTT AGAAAAACTG
CTTTTCTTTT ATCAGCATTA CCCTCAGATC ATTGCCAACA CAGAGTACAT AATAGAGCAG
TGTAATTTTG AATTTGATTA CAGCACTCCT AAAAATAAAA AATATTATAC ACAAAACCGC
CAGACCGATA TTGAACTTTT GACTATCCTG GCCCAGCAGG GACTCGAATG GCGTTACGGA
AAAGACAATA CCGAGGCCGG GGCCCGAATG ATCAAAGAGC TAAAAGTGAT TGACCAGCTT
GAATTCAGCG GGTATTTCCT CATCACCTGG GACATTATCC GCTACAGCAG CAGCAAGGGG
TTTCTGCATA TTGGACGCGG CAGCGGTGCC AATAGTATTA TCGCCTATTG CCTGGGTATA
ACCGATATCT GTCCCTTGGA ACTGGACCTG TATTTTGAAC GTTTCCTGAA CCTGAACCGT
AAGAGCCCTC CTGATTTTGA TATAGACTGG TCATGGAAAG AGCGTGATGT TATTCTTGAA
TATATTTTTT CCCGTTATGG AGCCGATCAT GTGGCTTTCT GCGGGACGAA TGTGGAATTC
AAATACCGCT CGATTTTTCG AGAAGTGGGT AAGGTTTTCG GACTGCCGAA AGAAGAACTC
GATGCGCTGG CCAAAAACCC GATGAACCTG CACCCCACTA ACAAAGTAGT CAGACAGGTG
CAGCAGTACG GCATGCTGCT CGAAAAATAC CCTAACCAGC GCAGCATGCA TTCCTGCGGT
ATCCTGATTT CTGAAGAGCC AATTACCAAC TATACACCGC TGGAAATGCC TCCCAAAGGC
TTTCCCATTG TGCTTTTTGA TATGCATACC GCAGAGGACA TTGGACTAGA GAAATTTGAT
ATCCTGAGCC AGCGCGGCAT CGGGCATATT GATGACAGCG TTAAAGTTAT TGAGAAAAAC
ACCGGAATAC GCATCAATAT CCGTGACACC TCGATTTCTA AAGATGAAGC CCTATGCAAC
CAGTTTTTAG CTGCAGGAAA AACAATTGGC TGCTTTTATA TTGAAAGTCC CGCCATGCGC
GGTCTCCTGC GCCGGCTGAA ATGCGGTGAT TACAAAACGC TCGTAGCCGC TTCTTCTATC
ATACGTCCGG GAGTGGCCCA GTCCGGTATG ATGAAGGAAT ACATCTACCG GCACAACCAT
CCCGATAAGT TTGAGTATTT CCATCCGGTG TTTAAGGAGC AGCTTGGAGA AACCTACGGC
ATTATGGTGT ATCAGGAAGA CGTAATTAAA ATTGCACAGC ATTTTGGCGG GCTTCCTGCC
GCTGACGGTG ATATTCTTCG CCGTGCCATG TCAGGCAAAG GACGCTCTAA AGCGGCACTG
CAGAAAGTAA AGGACAATTT CTTTGCATCC TGCGCCGCTC AGGGACATCC TCAGGCGCTG
AGCGCAGAAA TCTACCGCCA GATTGAATCC TTTGCCGGGT ATTCTTTCTG TAAGGCGCAC
TCCGCTTCCT ATGCGGTGGA AAGCTACCAG AGCCTGTATC TAAAGGTAAA CTATCCCATA
GAATTCATGG TAGCGGTAAT CAACAATCAG GGCGGGTTTT ACCGTACGGA AGTCTATGTG
CATGAAGCCA GGATGTCAGG AGGCATTATC CATCCCCCAT GTGTAAATAA AAGCGGGTAT
GAAACCACCC TGTACGGAAA GAACATCTAT CTGGGCTTTA TGCACCTGCA GGGGCTGGAA
TACAAAACAG CTGTTATGAT TGAAGAAGAG CGGTGTAAAA ATGGGGACTA TACATCGCTG
GAAGATTTTA TCAACCGAAT CCCAATAGGC ATTGAAGGGG TGCAGATTCT AATTTTTATA
GGGGCTTTTC ATTTTACCGG TAAAACCAAA AACCAGCTTT TAGTCATCTC AAGGCTGCTG
CTGGTTAATT ATAAACCAAA CAGCAGCAGT CTGAAACTTA TACAGGAACC CGCCAAAGAG
TTTCAGCTTC CTGCATTGGA ACGCTCTTTA TTTGAGGATG CTTTCGATGA GATTGAACTT
CTGGGTTTTC CGGTTTCCTG CTCGCCTTTT GAGCTGCTGC AGACTTCTTT CCGGGGGGAT
GTGATGGCAA AGGACCTGCT GGGGCATCAT AAAAAGCAGG TGCGTATGCT GGCGTATCTG
ATCTCGCGCA AACATGTGCC TACTAAAATG GGCGCTATGT ATTTCGGCAC CTGGATTGAT
GCACAAGGCG AGTTCTTTGA CACGGCCCAT TTTACGGGAA GCCTCAAGGA TTATCCCTTT
CAGGGCGGCG GCTGTTACCT GTTATTGGGC AGCGTTGAGG TAGATTACCA CTTCCCTACC
ATTACGGTTA CCAAAATGGC TAAAATGCCC TTTATACCGG ATCCCCGATA CGAACATGAA
AACGACTGGA AATACAAAAC CCAGCAGAAA CTGCGAGAAG ATGTCAGCAT GACCCACAGG
GCGCCCTATC CGCAGGAGCA TGAAATTAAC CTGCCCAGAC ATAAAATGAC AGATTAG
|
|---|
| Protein sequence | MYLNCHSFHS LRYGTIPVEE LVQLAVSLGV QAMALTDINT VTGIYDFIKL CNTAGIKPLI
GMEFRCRHQL HYIGLAKNTQ GLAGMNRFLT GHNFDGTPLP LHAPEIADAF FIYPLENTPQ
VLRENEYIGI QPEELQKLVL SEWKDRQHKM VVLQPVTFRS KTEYQLHKIL RAIDLNVLGS
RLKPEDCCRA SDTMMRLEKL LFFYQHYPQI IANTEYIIEQ CNFEFDYSTP KNKKYYTQNR
QTDIELLTIL AQQGLEWRYG KDNTEAGARM IKELKVIDQL EFSGYFLITW DIIRYSSSKG
FLHIGRGSGA NSIIAYCLGI TDICPLELDL YFERFLNLNR KSPPDFDIDW SWKERDVILE
YIFSRYGADH VAFCGTNVEF KYRSIFREVG KVFGLPKEEL DALAKNPMNL HPTNKVVRQV
QQYGMLLEKY PNQRSMHSCG ILISEEPITN YTPLEMPPKG FPIVLFDMHT AEDIGLEKFD
ILSQRGIGHI DDSVKVIEKN TGIRINIRDT SISKDEALCN QFLAAGKTIG CFYIESPAMR
GLLRRLKCGD YKTLVAASSI IRPGVAQSGM MKEYIYRHNH PDKFEYFHPV FKEQLGETYG
IMVYQEDVIK IAQHFGGLPA ADGDILRRAM SGKGRSKAAL QKVKDNFFAS CAAQGHPQAL
SAEIYRQIES FAGYSFCKAH SASYAVESYQ SLYLKVNYPI EFMVAVINNQ GGFYRTEVYV
HEARMSGGII HPPCVNKSGY ETTLYGKNIY LGFMHLQGLE YKTAVMIEEE RCKNGDYTSL
EDFINRIPIG IEGVQILIFI GAFHFTGKTK NQLLVISRLL LVNYKPNSSS LKLIQEPAKE
FQLPALERSL FEDAFDEIEL LGFPVSCSPF ELLQTSFRGD VMAKDLLGHH KKQVRMLAYL
ISRKHVPTKM GAMYFGTWID AQGEFFDTAH FTGSLKDYPF QGGGCYLLLG SVEVDYHFPT
ITVTKMAKMP FIPDPRYEHE NDWKYKTQQK LREDVSMTHR APYPQEHEIN LPRHKMTD
|
|---|
| |