Gene Fjoh_3564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFjoh_3564 
Symbol 
ID5093446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFlavobacterium johnsoniae UW101 
KingdomBacteria 
Replicon accessionNC_009441 
Strand
Start bp4255183 
End bp4257171 
Gene Length1989 bp 
Protein Length662 aa 
Translation table11 
GC content41% 
IMG OID644742989 
ProductType IV secretory pathway VirD4 components-like protein 
Protein accessionYP_001195897 
Protein GI146301306 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3505] Type IV secretory pathway, VirD4 components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACACAG GGGAAAATGA ACAGGCACTG AGAAAAATTT TAGATATGAC CCGCCTGATA 
AGCATCGTGC TTCTAGCAAT CCATTTTTAT TACTACGGCT ACTTTGTTTT CAAACAGCTC
GGCCTGGTCT CGCAATTCAG CGACAGGATT CTTGAGAATA TCTCCAGGGC AGGTTTATTT
AGTTATTTCC ACAAATCAAA ACTGCTGGCG CTACTCTTTG TTTTGATTTC ACTTCTCGGT
GCAAAAGGAA GGAAAAATGA AAAATTAAAA TTAAAGAAAG CGGTGCTTTT TCTGCTTGCC
GGACTGTTTT TTTATTTTGC CGGCTGGTTT ATTCTCCAGA CTGGCTGCAG TTTAGAAATC
GTTTTTCTGA TTTATGTTTT AACCACCAGC TCTGGTCTGC TTTTAATAAT TACAGCTGGT
ACCTTACTGA CAAGGATTGT CAGCAGAAGC CTGAACAGCC GTGACATATT CAATAAAGAA
AATGAAACCT TTCCGCAGGA AGAAAGACTC CTTGAAAATG AATATTCTAT TAATCTTCCG
GCGCAGTATT ACCTTCGTGA CAAGATTCGA AAAAGCTGGA TCAACATCAT AAACCCTTTC
AGGGGCGTCC TGGTCTGCGG TTCGCCTGGA TCCGGAAAAT CATATTTCGT GATACTTCAT
ATTATTACCC AGCATATAGC AAAAGGATTC AGCATGTTTG TCTATGATTT TAAGTTTGAT
GACCTGACCA GAATTGTATA TAATGCTTAT CTAAAGCACA GACATTTATA CAAGGTTGTA
CCAGAGTTTT ATGTCATTAA TTTTGATGAC CTCTCCCGCA CCCATAGGTG TAATCCCCTA
GACCCTTCCT CAATGACCGA CATAACCGAT GCAGCAGAAT CAGCCCGTAC CATCTTGCTT
GGATTAAATC GTGAATGGAT CAGAAAACAG GGTGATTTCT TTGTGGAGTC ACCAATAAAT
TTCCTGACGG CGGTGATCTG GTATCTCAGA AAATTCAACG ATGGAGAGTT CTGTACCCTG
CCGCATGTCA TCGAACTTAT GCAGCTCGAT TATAAGATTC TATTCACACT GCTGCGCTCT
GAAAAGGAGA TTGAGGTGCT GATCAATCCA TTTGTCAGTG CGTTTTTAAA TAATGCCTCC
GAGCAGCTGG AGGGCCAGAT TGCATCAGCA AAAATTTCAA TGGCAAGACT TTCTTCTCCC
CAGCTCTATT ATGTGCTTTC CGGAAATGAT TTTACCCTAG ACATTAACAA TCCTGATGCT
CCAAAAATTG TGTGCATGGG GAATAATCCG CAGAAAATAC AGACCTACGG AGCGGTACTT
TCACTCTATA TCAGCAGGCT TGTAAAGCTT GCCAATAGAA AAGACAAACT AAAAAGCAGT
CTTATTTTTG ATGAGTTTCC CACCGTCTAT CTAAACAATA TCGACAGCCT TATTGCCACC
GCACGAAGCA ATAAAGTAAG CACGACTCTG GGCATACAGG ACCTGAGCCA GCTTAAAAAA
GATTACGGCC GTGAACAAGC AGATGTGATC ATGAATATCA CCGGAAATAT TATATCCGGA
CAAGTGACAG GAGATACCGC AAAACAGCTC TCCGAGCGTT TTGGAAAAAT AATGCAGGAA
CGTGAAAGTC TTTCCATCAA TAGTTCCGAG ACTTCGATAA GCCGTTCTAG ACAATTGGAA
TCCGCAGTCC CGGCCTCAAA AATAGCATCA TTAAGTTCAG GTGAATTTGT AGGTATGACC
GCCGATAATC CGGACTGTAA AATTGAGCTT AAGACATTCC ACTGCGAGGT TTTAAACGAC
CATAATGCTC TTAGGCAGGA AATGGACAAC TACAAGGAAA TTGAACCAAT CCGTAATCTG
GACAATGCAC AGGTGAACAG GAATTATACC ATGATCAGAG AGGAAATCCA TGAACTTTCT
GAATCTGAAA TGGACCGTAT TTCCGAGAGC CGTCATCTGA AACATCTCAT TATTAAGAAG
AAAAATTAA
 
Protein sequence
MNTGENEQAL RKILDMTRLI SIVLLAIHFY YYGYFVFKQL GLVSQFSDRI LENISRAGLF 
SYFHKSKLLA LLFVLISLLG AKGRKNEKLK LKKAVLFLLA GLFFYFAGWF ILQTGCSLEI
VFLIYVLTTS SGLLLIITAG TLLTRIVSRS LNSRDIFNKE NETFPQEERL LENEYSINLP
AQYYLRDKIR KSWINIINPF RGVLVCGSPG SGKSYFVILH IITQHIAKGF SMFVYDFKFD
DLTRIVYNAY LKHRHLYKVV PEFYVINFDD LSRTHRCNPL DPSSMTDITD AAESARTILL
GLNREWIRKQ GDFFVESPIN FLTAVIWYLR KFNDGEFCTL PHVIELMQLD YKILFTLLRS
EKEIEVLINP FVSAFLNNAS EQLEGQIASA KISMARLSSP QLYYVLSGND FTLDINNPDA
PKIVCMGNNP QKIQTYGAVL SLYISRLVKL ANRKDKLKSS LIFDEFPTVY LNNIDSLIAT
ARSNKVSTTL GIQDLSQLKK DYGREQADVI MNITGNIISG QVTGDTAKQL SERFGKIMQE
RESLSINSSE TSISRSRQLE SAVPASKIAS LSSGEFVGMT ADNPDCKIEL KTFHCEVLND
HNALRQEMDN YKEIEPIRNL DNAQVNRNYT MIREEIHELS ESEMDRISES RHLKHLIIKK
KN