Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_3564 |
Symbol | |
ID | 5093446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | + |
Start bp | 4255183 |
End bp | 4257171 |
Gene Length | 1989 bp |
Protein Length | 662 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644742989 |
Product | Type IV secretory pathway VirD4 components-like protein |
Protein accession | YP_001195897 |
Protein GI | 146301306 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACACAG GGGAAAATGA ACAGGCACTG AGAAAAATTT TAGATATGAC CCGCCTGATA AGCATCGTGC TTCTAGCAAT CCATTTTTAT TACTACGGCT ACTTTGTTTT CAAACAGCTC GGCCTGGTCT CGCAATTCAG CGACAGGATT CTTGAGAATA TCTCCAGGGC AGGTTTATTT AGTTATTTCC ACAAATCAAA ACTGCTGGCG CTACTCTTTG TTTTGATTTC ACTTCTCGGT GCAAAAGGAA GGAAAAATGA AAAATTAAAA TTAAAGAAAG CGGTGCTTTT TCTGCTTGCC GGACTGTTTT TTTATTTTGC CGGCTGGTTT ATTCTCCAGA CTGGCTGCAG TTTAGAAATC GTTTTTCTGA TTTATGTTTT AACCACCAGC TCTGGTCTGC TTTTAATAAT TACAGCTGGT ACCTTACTGA CAAGGATTGT CAGCAGAAGC CTGAACAGCC GTGACATATT CAATAAAGAA AATGAAACCT TTCCGCAGGA AGAAAGACTC CTTGAAAATG AATATTCTAT TAATCTTCCG GCGCAGTATT ACCTTCGTGA CAAGATTCGA AAAAGCTGGA TCAACATCAT AAACCCTTTC AGGGGCGTCC TGGTCTGCGG TTCGCCTGGA TCCGGAAAAT CATATTTCGT GATACTTCAT ATTATTACCC AGCATATAGC AAAAGGATTC AGCATGTTTG TCTATGATTT TAAGTTTGAT GACCTGACCA GAATTGTATA TAATGCTTAT CTAAAGCACA GACATTTATA CAAGGTTGTA CCAGAGTTTT ATGTCATTAA TTTTGATGAC CTCTCCCGCA CCCATAGGTG TAATCCCCTA GACCCTTCCT CAATGACCGA CATAACCGAT GCAGCAGAAT CAGCCCGTAC CATCTTGCTT GGATTAAATC GTGAATGGAT CAGAAAACAG GGTGATTTCT TTGTGGAGTC ACCAATAAAT TTCCTGACGG CGGTGATCTG GTATCTCAGA AAATTCAACG ATGGAGAGTT CTGTACCCTG CCGCATGTCA TCGAACTTAT GCAGCTCGAT TATAAGATTC TATTCACACT GCTGCGCTCT GAAAAGGAGA TTGAGGTGCT GATCAATCCA TTTGTCAGTG CGTTTTTAAA TAATGCCTCC GAGCAGCTGG AGGGCCAGAT TGCATCAGCA AAAATTTCAA TGGCAAGACT TTCTTCTCCC CAGCTCTATT ATGTGCTTTC CGGAAATGAT TTTACCCTAG ACATTAACAA TCCTGATGCT CCAAAAATTG TGTGCATGGG GAATAATCCG CAGAAAATAC AGACCTACGG AGCGGTACTT TCACTCTATA TCAGCAGGCT TGTAAAGCTT GCCAATAGAA AAGACAAACT AAAAAGCAGT CTTATTTTTG ATGAGTTTCC CACCGTCTAT CTAAACAATA TCGACAGCCT TATTGCCACC GCACGAAGCA ATAAAGTAAG CACGACTCTG GGCATACAGG ACCTGAGCCA GCTTAAAAAA GATTACGGCC GTGAACAAGC AGATGTGATC ATGAATATCA CCGGAAATAT TATATCCGGA CAAGTGACAG GAGATACCGC AAAACAGCTC TCCGAGCGTT TTGGAAAAAT AATGCAGGAA CGTGAAAGTC TTTCCATCAA TAGTTCCGAG ACTTCGATAA GCCGTTCTAG ACAATTGGAA TCCGCAGTCC CGGCCTCAAA AATAGCATCA TTAAGTTCAG GTGAATTTGT AGGTATGACC GCCGATAATC CGGACTGTAA AATTGAGCTT AAGACATTCC ACTGCGAGGT TTTAAACGAC CATAATGCTC TTAGGCAGGA AATGGACAAC TACAAGGAAA TTGAACCAAT CCGTAATCTG GACAATGCAC AGGTGAACAG GAATTATACC ATGATCAGAG AGGAAATCCA TGAACTTTCT GAATCTGAAA TGGACCGTAT TTCCGAGAGC CGTCATCTGA AACATCTCAT TATTAAGAAG AAAAATTAA
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Protein sequence | MNTGENEQAL RKILDMTRLI SIVLLAIHFY YYGYFVFKQL GLVSQFSDRI LENISRAGLF SYFHKSKLLA LLFVLISLLG AKGRKNEKLK LKKAVLFLLA GLFFYFAGWF ILQTGCSLEI VFLIYVLTTS SGLLLIITAG TLLTRIVSRS LNSRDIFNKE NETFPQEERL LENEYSINLP AQYYLRDKIR KSWINIINPF RGVLVCGSPG SGKSYFVILH IITQHIAKGF SMFVYDFKFD DLTRIVYNAY LKHRHLYKVV PEFYVINFDD LSRTHRCNPL DPSSMTDITD AAESARTILL GLNREWIRKQ GDFFVESPIN FLTAVIWYLR KFNDGEFCTL PHVIELMQLD YKILFTLLRS EKEIEVLINP FVSAFLNNAS EQLEGQIASA KISMARLSSP QLYYVLSGND FTLDINNPDA PKIVCMGNNP QKIQTYGAVL SLYISRLVKL ANRKDKLKSS LIFDEFPTVY LNNIDSLIAT ARSNKVSTTL GIQDLSQLKK DYGREQADVI MNITGNIISG QVTGDTAKQL SERFGKIMQE RESLSINSSE TSISRSRQLE SAVPASKIAS LSSGEFVGMT ADNPDCKIEL KTFHCEVLND HNALRQEMDN YKEIEPIRNL DNAQVNRNYT MIREEIHELS ESEMDRISES RHLKHLIIKK KN
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