| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3360 |
|---|
| Symbol | |
|---|
| ID | 5092966 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 4019518 |
|---|
| End bp | 4022724 |
|---|
| Gene Length | 3207 bp |
|---|
| Protein Length | 1068 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644742785 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001195693 |
|---|
| Protein GI | 146301102 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAATA AAAATTACGA TTTCCTTGCA AAAGGAGGCG AAATGGGTGC GTTAACTCGT
GCCAAAGACT GGAGTAATAC TTCTGTTGGT GCCATAGAAA CCTGGCCGCA GAGTCTTTGT
ACTACTTTAG GAATTCTGTT AAACTCAAAG TTCCCGATGT TTTTATTTTG GGGACCAGAA
CATATTTGCT TTTATAATGA TGCTTACCGC CCAAGTCTGG GCAACGATGG GAAACATCCG
CATATACTGG GACAAAAAGG CGCCGAATAC TGGCCTGAAA TATGGCATTT TATAGGTCCG
CTGATTAATC AGGTTTTAAC CGAAGGCGAA GCTACCTGGC ATGAAGATCT GTATCTGCCT
ATTTACAGAA ACGGAAAAAT GGAAGATGTT TACTGGACTT TTAGTTATAG TCCCGTAAAA
AGTGAAGGTG GAAATATTGC CGGAGTTCTC GTGATTTGCA ACGAAACTAC CGATAAAGTA
AACATTCGCA AAAACCTTGA AGAAAGCAAT AAACGCTACA GAGAAAATCT TATGCAGGCG
CCAAATGCGA TGTGTATTTT TAAAGGAAGC AGTTTTATTG TAGAAATAGC AAACGAACCC
ATGCTCGAAA TATGGGAACG AGAAGAACAT GAAGTCCTAA ACAAACCTAT TTTTAAATCG
CTTCCTGAAG CTGCAGGCCG AGGTTTAGAA GATATTCTAA TGCAGGTTTA CCTTACAGGA
GAAAGATTTA CAGCCAATGA ACTTCCGGTA AAACTAACCC GAAACGGCAA AGTTGTCGAT
ACTTTTATCA ATGTCGTTTA TGAAGCGCTG AAAGAACCCG ACGGCACTAT TTATGGAATT
GTAGCCAGCG CAAACGACGT TACGCTGCAA GTAATGGCAC GAAATACGAT TGAAGAAAGC
GAAAAACGTT TTAAGAACAT CGTAAAACAG GTGCCGCTTG GAATTGCCAT TCTAAAAGGA
GCTGATCTGG TAGTGGAAAT GGTTAATGAA ACATACTTGC AAATAGTTGA TAAGACCGAA
GAACAAACGC TTCATAAATC AATTTTTGAC TCTGTGCCCG AAGCTCAGGA AACGGTTCAT
CCCCTGCTCT CTCAGGTTTA CGAAGACGGA ATCCCGTATT TTACAAATGA GTTATTGGTT
ACTTTAAACC GTTATGGAAA GCAGGAAGAC TGTTATTTCA ATCTGGTTTT TCATCCTTTG
CGAGAAGAAA ACAACGAAGT GACCGGCGTA ATTGTAGTGG GTTACGAAGT GACTGATTCT
GTTAAGGCAA AGTATTTTTT GAGTGAAAGC GAAAAAGCAT TCCGAAATCT GGTTATGCAG
TCGCCAATTG CCATGACTAT TTTTAAAGGC CACGATTATA TCATCGAACT TGCCAATACG
GCAATGCTTG ATGAGATTTG GCAGAAGAAG CCCAGCGAAG TTATTGGCAA ACCCGCTCTG
GAGGTGTTTC CGGAGCTATT AAATCAAAAG TTTCCCGAAT TACTAGATGA AGTACTATAC
GAAGGTAAAA CAATTCGGGA AAGCGAAGCT ATTGCATACG TGAATATAAA GGGTAAATTA
AAAAAGTATT ATCTCGATTA TCAATATACC CCTCTTTTTG AAAAAAACGG CGAAATATCG
TCGATTATGA TTACTGTAAA TGATGTTACA GAAAAAGTCG AAGCCCGAAA AAAAGTTGAA
GATGCCGAGG AAAGGGCCCG ATTAGCATCA GAAATTGCCG AAATTGTAAC ATGGGATTTA
AATGTTAATA CCCAGCAATT AATTTATTCT GATAACCTGC CGGAGCTTTT TGGTTTAAAA
AAGAATATAA AAATTTCACG TCAGCAGATT CTCGACCGAT TTTATATTGC AGATCTGCCT
ATATTAGAAA AAGCCTATCA AAAGGCTTTA AAAACTAATA TTTACAAATA TGAAGCCCGC
GTTCTTAAAC CAGACAATAC CACCTGCTGG ATACGCGTAC ATGGTAAAAT ATTTTTTGAT
GAATTACAAA ATCCTGTCAA AATGCTGGGA ACTGTTATGG ACGTAACAGA CGAAAAAAAC
AGACATGAGA TTTTAATGAA AAGTGAGGAA AAATTCAGGG TTCTTGCAGA TTCAATGCCT
CAGTTTGTAT GGACAAGCGA CGCTATGGGA AATATAGATT ATTTCAATCA GTCGCTGTAT
GATTTTACGG GAATTTCTAA AGAAGATGTA GAAAAAAACG GCTGGCTTCA GTTTATTCAT
CCTGAAGACC GCGAGGGAAA TGTAAACCGA TGGATGGAAT CTGTAAAAAC TGGAGAAGAG
TATTTATTCG AAAACCGATT CCGCCGTCAT GATGGCGAAT ACCGATGGCA ATTGAGCCGT
GCCATTCCAC AAAGAAATGC TGAAGGAAAG ATTCAAATGT GGGTAGGTAC AAGTACTGAT
ATTCAGAACC AAAGAGATTT TACAGATATG CTCGCTAAAC AAGTTCATGA TCGTACTCAG
GAACTGGAAC TTAAGAACAG GGATTTGATA AATATGAATA TTGAACTTCA GTCTTTTGCT
TATATTTCGA GTCATGATTT ACAGGAACCG CTTCGAAAAA TCCAGACTTT TGCAAGCCGT
CTGGCTGAGC TAGACGACCA GAATATTTCG GCGAAAGCCA AAACTTATTT AGAGCGCATT
GAAGTTTCGG CAAAGAGAAT GCAGACGCTT ATTCAGGATC TTCTCACTTA TTCCAGAACC
AATTCTGCCG AAAGGATTTT TGTAAAAACG AATCTGGACG AAATTGTAGA AGAAGTCTTA
ATGGATTTTT CTGAACGCAT TGAAGAAAAG AAAGCTGTTA TTGATCTTCA TCCGCTTGGA
GAAGGAACTG TTATGCCGTT TCAGCTTAGG CAATTACTGC ATAATTTGAT AGGAAATGCA
TTGAAATTTT CGCGCAAGGG AATACCGCCT CAAATACAGA TTAAAGCAAG ACGTGTTGTG
GGTCACAAAC TGGATTTTAA AGTGGATTAT CCCAACAATA TTTACTTTTG TTTGAGGATT
TCAGACAACG GAATTGGCTT TGACGACGAA TACAAAGAGC GTATTTTTGA GGTTTTTCAA
AGATTAAATA CTGAAAGTGA GTTCTCTGGA ACCGGAATTG GACTGGCAAT TGTAAAAAAG
ATTGTCGAAA ACCACAAAGG AGTTATAAAA GCACGCAGTG AAAAAGGCCA GGGAGCAACC
TTTAAGATCT TTCTGCCGGA ACTATAA
|
|---|
| Protein sequence | MTNKNYDFLA KGGEMGALTR AKDWSNTSVG AIETWPQSLC TTLGILLNSK FPMFLFWGPE
HICFYNDAYR PSLGNDGKHP HILGQKGAEY WPEIWHFIGP LINQVLTEGE ATWHEDLYLP
IYRNGKMEDV YWTFSYSPVK SEGGNIAGVL VICNETTDKV NIRKNLEESN KRYRENLMQA
PNAMCIFKGS SFIVEIANEP MLEIWEREEH EVLNKPIFKS LPEAAGRGLE DILMQVYLTG
ERFTANELPV KLTRNGKVVD TFINVVYEAL KEPDGTIYGI VASANDVTLQ VMARNTIEES
EKRFKNIVKQ VPLGIAILKG ADLVVEMVNE TYLQIVDKTE EQTLHKSIFD SVPEAQETVH
PLLSQVYEDG IPYFTNELLV TLNRYGKQED CYFNLVFHPL REENNEVTGV IVVGYEVTDS
VKAKYFLSES EKAFRNLVMQ SPIAMTIFKG HDYIIELANT AMLDEIWQKK PSEVIGKPAL
EVFPELLNQK FPELLDEVLY EGKTIRESEA IAYVNIKGKL KKYYLDYQYT PLFEKNGEIS
SIMITVNDVT EKVEARKKVE DAEERARLAS EIAEIVTWDL NVNTQQLIYS DNLPELFGLK
KNIKISRQQI LDRFYIADLP ILEKAYQKAL KTNIYKYEAR VLKPDNTTCW IRVHGKIFFD
ELQNPVKMLG TVMDVTDEKN RHEILMKSEE KFRVLADSMP QFVWTSDAMG NIDYFNQSLY
DFTGISKEDV EKNGWLQFIH PEDREGNVNR WMESVKTGEE YLFENRFRRH DGEYRWQLSR
AIPQRNAEGK IQMWVGTSTD IQNQRDFTDM LAKQVHDRTQ ELELKNRDLI NMNIELQSFA
YISSHDLQEP LRKIQTFASR LAELDDQNIS AKAKTYLERI EVSAKRMQTL IQDLLTYSRT
NSAERIFVKT NLDEIVEEVL MDFSERIEEK KAVIDLHPLG EGTVMPFQLR QLLHNLIGNA
LKFSRKGIPP QIQIKARRVV GHKLDFKVDY PNNIYFCLRI SDNGIGFDDE YKERIFEVFQ
RLNTESEFSG TGIGLAIVKK IVENHKGVIK ARSEKGQGAT FKIFLPEL
|
|---|
| |