Gene Fjoh_3345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFjoh_3345 
Symbol 
ID5092952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFlavobacterium johnsoniae UW101 
KingdomBacteria 
Replicon accessionNC_009441 
Strand
Start bp4000913 
End bp4002178 
Gene Length1266 bp 
Protein Length421 aa 
Translation table11 
GC content39% 
IMG OID644742772 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001195680 
Protein GI146301089 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAATA TATCTAGTTA TTTAACCGCA AAGAGCGTAA AGATTTTATC GCAAAGCTTA 
TTTTCTCTGC GTGCCTTGCT CCCGATGGCT ATCGGGATTG CGATCTTTGC GGTTAACTTA
ATAAGCTGTA ACCAAAAGAA AGCAGAAGAA CCCCAGAAAG AAGAAAAAGA AACTACAGAA
GTGGCTTTAA GCGAATCTCA ATACAAAACT GTAGGAATTG AAACGGGCAT TGTAGAAGAC
CGCAATCTTA ATAAAGTGAT CAAAGCAAAT GGTTACACGA CAGTTCCTCC GCAAAATTCA
GCTGAGGTTT CGACTCTAAT TGGCGGAACA GTGAAAGACA TTTATGTATT GGAAGGAACA
TTCGTTAACA AAGGGAAAGT TTTGGCAACG ATTCAAAATC TTGAAGTTAT TGGCATGCAG
GAAGATTACC AGTCGGCGGC TGCCAATGTA GAATATCTGC AATTAGAATA CAACCGCCAG
AAAACGCTGA GCGATGAAAA TGTAAATCCA AGAAAGACTT TTCAGGAAGT AAAAGCCAAA
TTAGCAGCAG AAAGAGCCCG TGCGCAGGCA GCAAAAAACA AATTAGATGC TTTGCACGTC
AACACAAAAG GAACAACATC GGTTGTGCCT ATTGTTTCGC CTATTAGTGG TTTTGTCGGG
AAAATCAATA TTGCCAAAGG TGCTTTTGCA AACACAGGAG TTTCGCTTTT TGAAGTAACA
GATAACAGCC AGATGCATTT AGATTTAAAT GTGTACGAGA AAGATTTAGG TTCGATTTCT
ATTGGTCAGG TGATCGATTT TGTATTAACG AATCAGTCGA ACAAATCGAT TAAAGGAAAG
ATTTTCGGAA TCAATAAATC ATTTTCTAAC GAAAGTAAAA CCGTTGCTGT TCATGCGAAA
ATCGATCCTG CCGATGCCAA AGGCCTGATT CCTGGAATGT ATGTTTCGGC AAATATTAAT
ATTACAAACG CAACAGTCCC GGCATTGCCA AAAGACGCCG TTGTTCGAAA CGCTGATAAA
TATTTTGTTT TTGTACAAGA AGAAAGCCAT ACAGAAGAAA AGCACGAGCA TAAAGAAGGA
GAAAAAGAAG AAGCTCACGA AAAAGAAATT CATTTTAAAG CCATTGAAGT CGTTCCTGGA
ACTACAGATT TAGGTTTTAC AGAAGTTAAG TTCGTTGATA AGATTGACTC TCAGGCAAAA
ATTGTTACAA AAGGTGCTTT TTACCTGCTT TCGGCAATGA AAGGCGGAGG AGAGCACGAA
CATTGA
 
Protein sequence
MKNISSYLTA KSVKILSQSL FSLRALLPMA IGIAIFAVNL ISCNQKKAEE PQKEEKETTE 
VALSESQYKT VGIETGIVED RNLNKVIKAN GYTTVPPQNS AEVSTLIGGT VKDIYVLEGT
FVNKGKVLAT IQNLEVIGMQ EDYQSAAANV EYLQLEYNRQ KTLSDENVNP RKTFQEVKAK
LAAERARAQA AKNKLDALHV NTKGTTSVVP IVSPISGFVG KINIAKGAFA NTGVSLFEVT
DNSQMHLDLN VYEKDLGSIS IGQVIDFVLT NQSNKSIKGK IFGINKSFSN ESKTVAVHAK
IDPADAKGLI PGMYVSANIN ITNATVPALP KDAVVRNADK YFVFVQEESH TEEKHEHKEG
EKEEAHEKEI HFKAIEVVPG TTDLGFTEVK FVDKIDSQAK IVTKGAFYLL SAMKGGGEHE
H