| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3316 |
|---|
| Symbol | |
|---|
| ID | 5093034 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 3961492 |
|---|
| End bp | 3962484 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 644742743 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001195651 |
|---|
| Protein GI | 146301060 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.606896 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTTA AAATTGATTC TAATGACTTT GCGGATTTTC TGGAAGTGGA TGAAAAGCCA
GATCTGGAAC TGTCCAGGAT AGAAATTCAG GATGAAAAAG ATATAAAATT TGCCACACCA
AAAGGCGATA TTTTATTTCA TGAACATACT ATTACAGATG AATTATCTAT TCTGCAGGGA
AATTATCAAT TGTATGACGA TGTTGCTATT TCTGGTCATG GAGATTCTCC GCTGTTAGAA
ATGCACTTTA ACCTTACCAA TCAAAAAATT GGATATATAA ATCCGGGTTC TTCTAAAGGT
TATGCTTCAC CAATGTCCGG CAATATTACT TTTCTTTCAG CCGAAGACAA CCATGCAAAA
ATCGACTTCA AAAAAGATAT TATTTACAAT ACGTTTGATA TTCATCTTCC TTTAAATGTG
CTTACTAAAT ATGAGGGAGA GTCTAAAGTA ATGGACAGTT TTCTCAATAA TATTCAGAAA
AACAGCAGTA ATGCTTTAGC TAAAAATGAA ATAAAAATAA GTGCTAAAAT ATTCAGCGTT
ATAGAAGATA TTAAAAACTG TTTTTATCGA GGCCTGACTC GAAAAATCTA CATGGAATCT
AAAGTCTATG AACTTATTGC TTTAAGTCAT CATAATTTAG ATATCGAAAA ACAATCCCGA
AACTTAGCCG GCGATGATGT GGAAAAAATA AAGTTTGCAG CGCAGTTAAT CCGTGAAAAT
ATTGATAATC CGTTTACAAT TGTAGAACTG GCAAGAAAAG TGGGCGTGAA CCAAACCAAG
CTGAAAGAAG GTTTTAAAAC TGTTTTTGGC GATACCGTTT TTGGCTATCT GCAGGAAATC
AGAATGAATA AAGCCAGACA TTATTTATCA GACACTTCAC TATCAATTCA GGAAATAAGC
CACCTTTCCG GTTATCAAAA TGTTTCTAAT TTTAGTATTG CTTTTAAAAG AATTTTCGGC
TATCCGCCTA CTAAATTGAG GCTTAAGGTT TAG
|
|---|
| Protein sequence | MAFKIDSNDF ADFLEVDEKP DLELSRIEIQ DEKDIKFATP KGDILFHEHT ITDELSILQG
NYQLYDDVAI SGHGDSPLLE MHFNLTNQKI GYINPGSSKG YASPMSGNIT FLSAEDNHAK
IDFKKDIIYN TFDIHLPLNV LTKYEGESKV MDSFLNNIQK NSSNALAKNE IKISAKIFSV
IEDIKNCFYR GLTRKIYMES KVYELIALSH HNLDIEKQSR NLAGDDVEKI KFAAQLIREN
IDNPFTIVEL ARKVGVNQTK LKEGFKTVFG DTVFGYLQEI RMNKARHYLS DTSLSIQEIS
HLSGYQNVSN FSIAFKRIFG YPPTKLRLKV
|
|---|
| |