| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3303 |
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| Symbol | |
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| ID | 5093021 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Flavobacterium johnsoniae UW101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009441 |
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| Strand | + |
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| Start bp | 3945432 |
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| End bp | 3947999 |
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| Gene Length | 2568 bp |
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| Protein Length | 855 aa |
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| Translation table | 11 |
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| GC content | 35% |
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| IMG OID | 644742730 |
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| Product | ATP dependent DNA ligase |
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| Protein accession | YP_001195638 |
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| Protein GI | 146301047 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.300283 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTATGT CACTGTCTAA ATACAACGAA AAGAGAGATT TTAAGCAAAC ACGCGAGCCA
AAAGGCAAGG TTGAAAAATC GGCCAATGAA TTGATTTTTG TCGTTCAAAA ACATGCTGCA
TCGCATTTGC ATTATGATTT TAGACTGGAA ATGAACGGCG TTCTCAAAAG CTGGGCAGTT
CCAAAAGGTC CTTCAATGGA TCCCGAAGTA AAACGTCTTG CTATGATGGT CGAAGATCAT
CCTTACAGTT ATAAAGATTT TGAAGGAACA ATTCCGGCCG GAAACTATGG CGCCGGAAAT
GTAATTGTAT GGGATAACGG TACGTATACT TCTGACGAAA AAACAGCTTC TGATGAAAAA
CAGCTTTTAG CCGATCTTAA AAAAGGCCGT CTGAGTTTTG TCTTAAAAGG AAAAAAACTT
AAAGGCGAAT TTTCATTGGT AAAACTTCAT GGAAAACAGG AAAATGCCTG GCTTTTAATC
AAAAAACAGG ATAAATATGC TTCAGAATCA GATATATTAG AAAAAGACAA ATCGGTTATT
TCTAAAAGAA GTCTGGAAGA ACTGGAGAAA AAATCAGATA AGATGACCGC CAAATCTGAA
GAAAAAGAAA CCAAACTAAA AGCCATAAAA AAAAAGCCTA AAGCAAAAAC TATAAAAGCC
GAATTCATCA AACCGATGCT TGCCAATACT ACAGAAAAAC CTTTTGATGA CGAGGAATGG
ATTTTTGAAA ATAAATACGA CGGTTACCGT ACGATTGCTG TTGTTAACTC TGATAAAACA
GCATTATTCA GCAGAAATAA AATTTCTTTT GATATCAATT TTAAACCCAT TGCAGACGAA
TTAAAAAAAA TAGATCATAC CGTAGTTCTC GATGGCGAAA TTGTAGTGGA AAATAAATCT
GGACGAGCCG ATTTTCAACT GCTTCAAAAC TATTTAAAAA CCGGAATTGG AAATTTAAAA
TATTATGTTT TTGATTTACT CAATTTAGAC GGAAATGAGG TGACAGAATT GTCTCTCCTC
GATCGAAAAG AACTTCTTAA AATTTTATTT AATAAATATT CTTTTTCGAA TATTTTCTAT
TCTGAACATA CAATTGCAAA TGGAATTGAG CAATTTGAAA AAGCGCGAAA AAATAACAGC
GAAGGAATAA TTGCCAAAAA AGCAGACAGT TCTTATACCG CTGGCGGAAG AAGCAATAAC
TGGCTGAAAA TAAAGATTTC TAACGAAGAA GAAGCCATTA TTATCGGGAT TACAGAACCC
AAAAATTCCC GAAAATATTT TGGCGCAATT TTGCTGGGTC AATACAACGG TAAAAATCTG
CAATATATAG GGAAATGCGG CACTGGATTT ACCGAAGCTG TTTTAAAAGA ACTTTATACT
AAATTAAAAC CTCTTTTTAC AGATCAATCA CCATTGCAGG AAAAAGTTCC TTTACGGGAT
ACTATTCAAT GGGTAAAGCC CAAATTAGTC TGTCAGGTAA AATACTCTGA ATGGACGCAG
GATAACAATT TAAGACATCC GGTTTATCTG GGATTACGAA TTGACAAAAA AGCCCAAGAG
GTTGTTTTTA ATGGAAATGA CAACACTAAA ACTATAAATC ACAATCAGGA AAAAATGGAA
AATTTAAAAG AACATACAAC TGAAAATGAT TACGATTTAA AAATTGGAAA AACGATACTC
CATTTAACCA ATCAAAATAA AATTTATTTC CCGCAGGACG GAATTACAAA AGGCGATATT
ATTCAATATT ATAATGAAGC CGCACCGTTA ATGCTGCCCT ATTTAAAAGA CCGTCCAGAA
TCGATGAACC GTTTTCCTAA CGGAATTGAT TCGCCTGGTT TTTACCAAAA AGATATTGAT
GCCGACAAAA CTCCAAAATG GCTGAAAACC AAAAAAATCT TTTCAGAATC AAACGATGCC
GATGTTAATT ATCTTATTTG TAATGATAAA GAAACGCTGC TTTATATGGC AAATTTGGGC
TGTATTGAAA TCAATCCGTG GAATTCCACT ATAAAAAACA TTTCGAATCC GGATTGGCTG
GTAATCGATT TAGATCCTGC GAAAGAAGAT GATTTTAAAT CTGTAATCGA AACAGCATTA
GTAGTTAAAG AAGTTATGGA TGAATTGCAA ACCGAGTGTT TGTGCAAAAC TTCCGGAGCT
TCAGGACTGC ATATTTATAT ACCGCTTGGC GCACAATACG ACTATGATTC TATTAAAATC
CTGGCCGAAT TAATTGCAAA AGAAGTACAT ACAAGACTGC CTAAAACTAC TTCAATTGAA
CGAAGCATCA AGAAAAGAAA AAATAAATTG TATATCGATT TTCTTCAAAA CCGAAGAGGA
CAAACTTTGG CCGCGCCCTA CTCTGTCCGC CCGCAACCAG GCGCAACAGT TTCGACTCCG
TTAGAATGGA ATGAAGTAAA TGAAAAACTT CATCCGTCGC AGTTTACGAT AAAAAATGTA
TTGCAGCGTT TTGAGAAAAA GGGTGATTTA TGGAAACCTG TTTTGTCAAA AGGTGCCAAT
ATCAAAAAGA TTATCAAGAA ATTAGAGGAA AAACAACTGG AAAATTAA
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| Protein sequence | MPMSLSKYNE KRDFKQTREP KGKVEKSANE LIFVVQKHAA SHLHYDFRLE MNGVLKSWAV
PKGPSMDPEV KRLAMMVEDH PYSYKDFEGT IPAGNYGAGN VIVWDNGTYT SDEKTASDEK
QLLADLKKGR LSFVLKGKKL KGEFSLVKLH GKQENAWLLI KKQDKYASES DILEKDKSVI
SKRSLEELEK KSDKMTAKSE EKETKLKAIK KKPKAKTIKA EFIKPMLANT TEKPFDDEEW
IFENKYDGYR TIAVVNSDKT ALFSRNKISF DINFKPIADE LKKIDHTVVL DGEIVVENKS
GRADFQLLQN YLKTGIGNLK YYVFDLLNLD GNEVTELSLL DRKELLKILF NKYSFSNIFY
SEHTIANGIE QFEKARKNNS EGIIAKKADS SYTAGGRSNN WLKIKISNEE EAIIIGITEP
KNSRKYFGAI LLGQYNGKNL QYIGKCGTGF TEAVLKELYT KLKPLFTDQS PLQEKVPLRD
TIQWVKPKLV CQVKYSEWTQ DNNLRHPVYL GLRIDKKAQE VVFNGNDNTK TINHNQEKME
NLKEHTTEND YDLKIGKTIL HLTNQNKIYF PQDGITKGDI IQYYNEAAPL MLPYLKDRPE
SMNRFPNGID SPGFYQKDID ADKTPKWLKT KKIFSESNDA DVNYLICNDK ETLLYMANLG
CIEINPWNST IKNISNPDWL VIDLDPAKED DFKSVIETAL VVKEVMDELQ TECLCKTSGA
SGLHIYIPLG AQYDYDSIKI LAELIAKEVH TRLPKTTSIE RSIKKRKNKL YIDFLQNRRG
QTLAAPYSVR PQPGATVSTP LEWNEVNEKL HPSQFTIKNV LQRFEKKGDL WKPVLSKGAN
IKKIIKKLEE KQLEN
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