| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3288 |
|---|
| Symbol | |
|---|
| ID | 5093006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 3929652 |
|---|
| End bp | 3931844 |
|---|
| Gene Length | 2193 bp |
|---|
| Protein Length | 730 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644742715 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001195623 |
|---|
| Protein GI | 146301032 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTGAAA ATAAATCAAA CAGCATATTG ATTTTTGTGT TATTCTGCTT TGCTTTTTTG
ACACAAGTCC ACTCTCAGAA CACCAATTCG GAAATAAAAG AACTTGAAGA AGTAGTGATT
AAAGACCAGT CAGAAAAACG CGCCAAGAAA GAAGCATCAT TAAATACCGA AACGGTAAAC
AGCAATTTTA TTCAGCGGAA TCTCGGCGGA AGCCTGATGC AGTCCTTACA GCGAATTCCG
GGAGTTAAAA CCATTTCGAT AGGTTCAGGA GGTTCAAAAC CATTGATTCG CGGACTGAGT
TTTAATCAGG TTATTGTAGT CGAAAACGGT ATTAAACACG AAGGCCAGCA ATGGGGCGCA
GATCACGGGC TTGAAATCGA TCAATATGCT GTTAATCGGG TGGAAATTAT AAAAGGTCCT
TTGTCATTTA TTTATGGTTC TGATGCTATT GGCGGTGCAG TTAATATCAA ACCTGTGCCC
TTTCCTAAAA AAAATACTTT GGGCGGTAAT GTAGATTTTA CAGCCAAAAA TAATAATGAA
CAAATTGGAA GTTCACTGAA TTTGTTTGGA CGAAATGAAA ACTGGTTTTT CGATACCAGA
ATTACATCAC AGGATTATGG CGATTACAGG GTTCCAGCTG ATAAGGTTCA GGTTTACAAT
TATACAGTGC CCTTATACAA AAATCATTTG CGTAATACTG CTGGACGTGA ACTGGATTTG
CATGCCAGTA CAGGATTTGT GGGCGAAAAG TTCAAATCGG TTTTGTATTT CAGTAATATA
CATACCAAAA GCGGCTTTTT TGCGAATGCA CACGGACTTG AACCTCGTAA TGTAAATCTT
GAACTTCATG ATAAATCGAG TCGTGATATT TTAATGCCTT TTCAGGAAGT TAATCATACT
AAAATCAGTA ATACAACTTC ATTTGAAATA GGAAATCATC AGCTGCAGAC ACAATTGGGT
TTTCAGAAGA ATTTCCGCAG AGAATGGAGT CATTATGTAA ATCATGGTTA TATGCCGCCA
ATTTATCCTG CAGATATGTA TGCACCGCAG GATTTGGAAA GACAATACGA CAAAGATGTT
TTTTCGGTTT CTGTAAAAGA TGGGTTTTCT GTTGACAGAC ATCAATTTAC AGTTGGCTTA
AACGGAGAAA AACAGCAAAA TGAAATTAAC GGCTGGAGTT TTCTAATTCC CGCTTTTAAT
CAGCTGAATA CAGGATTGTA TGCCTATGAT AAAATACAGC TGAATGATTT ATGGATACTG
CACGGAGCCG TGAGAATGGA TTATGGCCAA ATCGAAATGA AACAACATAC AGACTGGTTT
AAAAGTGATG TGACACAAAA CGGACAGACA ACTCAGGAAT ATTTAAAACG ATCTGAAGAT
TTAAACAAAA CATTTAAAAG TTTTACATGG TCAGCAGGGA TAAATTACAA TCCGGGCAAG
TTCTCGTTTA AAGCCAATGC AGGAACGAGT TTTAGAATGC CAATTGCGAA AGAATTAGCT
TCAAATGGTG TCAATTATCA TTATTTCCGA TTTGAAAAAG GAAATCCAAA TCTTGATGCC
GAGCGTTCGT ATCAATTGGA TCTTGGTATC GACTGGCAGG AAAGCAAATG GTCTGTGCAG
CTGAGTCCGT TTTTTAATTA TTTCCCAAAT TTCATTTACC TAAACCCAAC CTCACAACAT
GATATTTATT ATGGAGCAGG AAATCAGGTT TTTGAATATC AGCAGAGTAA AGTTATGCGT
TACGGAAGCG AGTTACAGAT ACATTATCAG TTTCTAAAAA ATCTAAGCGG TGAGATTTTG
GCAGAATATC TTTATTCTGA ACAATTATCG GGCAGTAAAA AAGGATATAC GCTTCCGTTC
TCTCCTCCTG CTTCGGTTTT ATTTGGACTC AGTTATAATC CCGAAATCAA GAATTTAAGA
GAAACTTATT TTTCGCTCGA TTATCGTTTT ACGGCTCAGC AAAATCAGAT TGTACCGCCC
GAAAAAAAAA CAGAAAGCAG TCATGTTTTC AATCTCGCAT TAGGAACAAA ATTACAAGCC
GAAAAGCAGG ATTTTGCTGT CTCGCTTCAG GTCCAGAATT TATTTAATAC AAGATACCTG
AATCATACAA GCTTTTACAG ACTTATAGAA CTTCCGGAAA TGGGCAGAAA TATTATTCTT
TCTGTAAAAG TTCCTTTTTT AATTCATCAA TAA
|
|---|
| Protein sequence | MIENKSNSIL IFVLFCFAFL TQVHSQNTNS EIKELEEVVI KDQSEKRAKK EASLNTETVN
SNFIQRNLGG SLMQSLQRIP GVKTISIGSG GSKPLIRGLS FNQVIVVENG IKHEGQQWGA
DHGLEIDQYA VNRVEIIKGP LSFIYGSDAI GGAVNIKPVP FPKKNTLGGN VDFTAKNNNE
QIGSSLNLFG RNENWFFDTR ITSQDYGDYR VPADKVQVYN YTVPLYKNHL RNTAGRELDL
HASTGFVGEK FKSVLYFSNI HTKSGFFANA HGLEPRNVNL ELHDKSSRDI LMPFQEVNHT
KISNTTSFEI GNHQLQTQLG FQKNFRREWS HYVNHGYMPP IYPADMYAPQ DLERQYDKDV
FSVSVKDGFS VDRHQFTVGL NGEKQQNEIN GWSFLIPAFN QLNTGLYAYD KIQLNDLWIL
HGAVRMDYGQ IEMKQHTDWF KSDVTQNGQT TQEYLKRSED LNKTFKSFTW SAGINYNPGK
FSFKANAGTS FRMPIAKELA SNGVNYHYFR FEKGNPNLDA ERSYQLDLGI DWQESKWSVQ
LSPFFNYFPN FIYLNPTSQH DIYYGAGNQV FEYQQSKVMR YGSELQIHYQ FLKNLSGEIL
AEYLYSEQLS GSKKGYTLPF SPPASVLFGL SYNPEIKNLR ETYFSLDYRF TAQQNQIVPP
EKKTESSHVF NLALGTKLQA EKQDFAVSLQ VQNLFNTRYL NHTSFYRLIE LPEMGRNIIL
SVKVPFLIHQ
|
|---|
| |