| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3240 |
|---|
| Symbol | |
|---|
| ID | 5093401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 3861008 |
|---|
| End bp | 3862462 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 644742667 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001195575 |
|---|
| Protein GI | 146300984 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAG AAATAAATAG ATATATAATC TTCGGAGGCG TTTTACTGCT TACAGCCTGC
TCTGCTCCTA AAATCAACAA TAATTTCGCG GCAAAACAAC TGCCTGAAAA TTTTGATTTG
AAAAGAAAAA AAGCAGAAGA CAGTCTGCAG GATTTTATTC CGCTAAAAAC AGAAACCTAT
TTTAAAGATG CCAAACTGGA AAACCTTTTA AAGAAAGCCA TTGCCCAAAA TCCTGACTAT
TTAATTATGC AGGAAAGAAT TTTAATTGCC AATTCGCATT TAAAAGCAGC AAAACTGGGG
CTTCTTCCTT CTTTGGATTT TGTGGCTGAT GCTTCCGGAA CGCATTATGG AAAATACACT
ATGGACGGTG TAGGGAATTT TGATACCAAT TTTTCGCAAA ATATTAATGA AAAACAAAGG
ATAAACGAAG ATGTAACCCC TAACCTCTTT TTAGGCGGAA AAGTTTCGTG GGAAGCTGAT
ATTTGGGGAA AACTGAGCAA TCGAAAAAAA GCGGCTCGTG AACGTTTCTT TGCTTCTCAG
GAAGGAATGC GTTTACTGCA AACCCGATTG TTAAGCGATG TCGCCGATTT GTATTATAAA
CTGATCGCTT TAGACAAACA GGCTTCGATT TACGATAAAA ACCTCAAAAC ACAACAAAAA
GCGCTTGATA TTATTTCGGC ACAACGATCT GTGGGAAAAG CAACCGAATT GGCTGTACAG
CAGTTTAATG CTCAGAATAA TAATATTTTA GCCGAAGCTG AACAGCTGAA TTTAAGCATT
GACCAAACTG AAAAAGCGTT ATTAAATCTT TTAGGGGAAT ATGGCGGAAA AATCGACAGA
AGTTCTGATT TTCTTTCTGG TCATCTTGAG GTGTTAAATC AAAAAATAAG CGTAGATTCG
ATTATTCATA AAAGACCCGA TGTATCTGAA GCGTATCATG AACTTCGTGC CTCAAATGCC
GATGCTAAGG CTGCACGTGC TGCCTTTTTC CCGACTTTAA ACTTGGGAGG TTATGCCGGA
TTTAACTCGT TTTCTTTTTC AACTTTTTTT GATAACGGAT CGTTTGCCTG GCAATTGCTT
GGCGGATTAA CAGCTCCGGT TTTTAATAAG GGACAAATAA AACAAGAATT TTTTGTATCT
AATAAAAGAC AGCAGATTTC GTTTCTGCAA TATCAAAATA CAATTACAAC AGCGTATAAT
GAACTCAGTG CTTTACTGCA CAGAACAGAA TCTTTTGTTG ATGTTTTGAA ATATAAATCG
AAGGAAATTG AACATCTCGA AATTGCTGTA AACGTTTCAA ATGATTTGTA TTTGAGCGGT
TATGCCAATT ATCTGGAAAT TATTAATGCC CAAAAAAATA AACTGCAGGC CGAACTTGAC
TTTGTCGACA TTCAATTAAA AAATGCAGAG TCACAGGTTT TATTGTACAA GGCTTTAGGA
GGAGGAATTA ACTAA
|
|---|
| Protein sequence | MKQEINRYII FGGVLLLTAC SAPKINNNFA AKQLPENFDL KRKKAEDSLQ DFIPLKTETY
FKDAKLENLL KKAIAQNPDY LIMQERILIA NSHLKAAKLG LLPSLDFVAD ASGTHYGKYT
MDGVGNFDTN FSQNINEKQR INEDVTPNLF LGGKVSWEAD IWGKLSNRKK AARERFFASQ
EGMRLLQTRL LSDVADLYYK LIALDKQASI YDKNLKTQQK ALDIISAQRS VGKATELAVQ
QFNAQNNNIL AEAEQLNLSI DQTEKALLNL LGEYGGKIDR SSDFLSGHLE VLNQKISVDS
IIHKRPDVSE AYHELRASNA DAKAARAAFF PTLNLGGYAG FNSFSFSTFF DNGSFAWQLL
GGLTAPVFNK GQIKQEFFVS NKRQQISFLQ YQNTITTAYN ELSALLHRTE SFVDVLKYKS
KEIEHLEIAV NVSNDLYLSG YANYLEIINA QKNKLQAELD FVDIQLKNAE SQVLLYKALG
GGIN
|
|---|
| |