| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_3004 |
|---|
| Symbol | |
|---|
| ID | 5090355 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 3550902 |
|---|
| End bp | 3553415 |
|---|
| Gene Length | 2514 bp |
|---|
| Protein Length | 837 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644742436 |
|---|
| Product | Type IV secretory pathway VirB4 components-like protein |
|---|
| Protein accession | YP_001195344 |
|---|
| Protein GI | 146300753 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAATT CGTCAAAGAC AGCAACGCTG GAGAGCAGAT TACCCCTGCT GGCGGTGGAG
CAGAACTGCA TCATCTCCAA GGATGGGGAT GTTACGGCCT GCTTTGCCGT ATCGCTTCCG
GAGCTTTTTA CTGCGGGATC GGCAGATTAT GAGGCCATCC ATTCCGCCTG GCACAAGGCG
GTGAAGACCC TGCCTGATTT TACGGTCGTG CACAAGCAGG ACTGGTATGT CAAGGAAAAC
TACAATCCGA ATATGGAGGG GGAGGAACAG AGTTTCCTTG CAAGAACCTT CGAGAGGCAT
TTCAACGAAC GCCCGTTCCT GAACCACTGC TGCTATCTGT TCCTCACCAA GACCACACGG
GAAAGGATGA GGATGCAGAG CAATTTCTCA TCGCTCTGCA GGGGAACGCT GATTCCGAAA
GAAGTCAGGG ATCCAGAGGC TATCAGGAGA TTTATGGAGA CTGTGGCGCA GTTTGAGCGC
ATCCTCAACG ACAGCGGGCT TATCAGGCTC AATAGGCTGA CGGAAGAAGA CCTGACGGGA
GCCGATCACA GGCAGGGGAT ACTGGAGCAG TACCTTACCC TTTCCAAAGA GGAGGGCGCA
TCATTGGAAG ATATCGCCTT GGGAGCTGAG CAGGTTAGGG TGGGTTCCAA AAGGCTTTCG
CTGCATACGC TTTCCGATAC GGACGACCTC CCTGCGGCTG TTGCATCCGA TACCCGCTAC
GAGAAGCTCT CGACCGACCG CAGCGACTGC CGCCTGTCTT TTGCCGCTCC AGTCGGCCTT
CTTCTGGGCT GCAACCATAT CTACAACCAG TACCTGTTTC TGGACAGCAG CGAGGAGAAC
CTGCAGAAGT TCGAGAAGTC GGCGCGAAAC ATGCATTCCC TTGCACGCTA CAGCAGGGCG
AACCAGATCA ATAGGGAATG GATAGAGAAA TACCTGAACG AGGCGCATTC GTTGGGGCTC
AGTTCCATCA GGGCGCATTT CAACATTATG GCATGGTCGG ATGATCCTGC AGAGCTCAAA
CAGCTCAAGA ATGACTGCGG CAGCGCTCTG GCGCTGATGG AATGCAAACC GAGGCACAAC
ACGGCTGACG CCGCGACGCT GTATTGGGCG GGAATGCCGG GCAATGCGGG CGATTTCCCA
TGCGAGGAAA GCTTCTACAC CTTCATTGAG CCTGCGCTGT GCCTGTTCAC ACAGGAAACG
AACTACCGCA GCTCCCCATC GCCGTTCGGC ATCAAGATGG CCGACAGGCT CACCGGCAGA
CCGATCCATC TGGATATTTC GGACCTGCCC ATGAAGCGCG GGATCATCAC CAACCGCAAC
AAGTTCATCC TCGGGCCTTC GGGAAGCGGG AAGTCCTTCT TTACCAACCA TATGGTCAGG
CAGTACTACG AGCAGGGTGC GCATGTGCTT CTGGTGGATA CAGGGAATTC CTATCAGGGA
CTGTGCGGGC TGATCAACAG CAGGACCCGA GGGGAGGACG GTGTCTACTT CACCTACACG
GAGGACAATC CCATTGCCTT CAACCCCTTC TATACCGATG ACAAGGTATT CGATATAGAG
AAAAGGGAAA GCATCAAAAC CCTGATAATG ACCCTGTGGA AGCGGGATGA CGAGCCTCCG
ACGCGTTCGG AGGAAGTGGC GCTTTCCAAT GCCGTGAACG GCTACATCGA GCTGATCAGG
GACAATGGGC TGGCTCCATC CTTCAACGGA TTCTACGAGT ACGTAAAGGG GGATTACCAC
GAAATCCTGA AAGAGAAGCA GGTGCGCGAG AAGGACTTTG ACATCGCCAA TTTTCTGAAT
GTGCTGGAGC CGTATTACAG GGGAGGCGAG TACGATTACC TGCTGAATTC GGACAGGCAG
CTGGACCTGC TGGCTAAACG GTTTATAGTC TTTGAAATCG ATGCGATAAA GGACCACAAG
ATCCTGTTTC CCATAGTGAC GATCATCATC ATGGAGGTCT TCATCAACAA GATGAGAAGG
CTGAAGGGGG TGCGCAAGCT GATCCTTATC GAGGAGGCTT GGAAGGCGAT CGCCAAGGAA
GGAATGGCCG AGTACATAAA GTACCTTTTC AAGACCGTGC GCAAGTTCTT CGGCGAGGCC
ATAGTGGTGA CCCAGGAAGT GGACGATATC ATCAAATCTC CCATTGTGAA GGAGAGCATC
ATCAACAATT CCGACTGCAA GATCCTTCTG GACCAGCGCA AGTACATGAA CAAATTCGAT
GACATACAGG CGATGCTCGG ACTTACCGAC AAGGAAAAGG CGCAGGTGCT TTCGATCAAT
ATGAACAACA GTCCCTCTCG TCTCTACAAG GAAGTCTGGA TAGGTCTGGG AGGAACCCAG
TCCGCGGTGT ATGCCACCGA GGTGAGCCTG GAGGAATACC TGGCCTACAC GACCGAGGAA
ACCGAAAAGA TGGAGGTCAT GCAGGCGGCT GCAGAGCTGG ACGGTAACGT CGAGCTAGCC
ATCAGGCATA TTGCGAAGCT GAGATGGGAG AGGGAAAACG AGAATAATCA ATAA
|
|---|
| Protein sequence | MRNSSKTATL ESRLPLLAVE QNCIISKDGD VTACFAVSLP ELFTAGSADY EAIHSAWHKA
VKTLPDFTVV HKQDWYVKEN YNPNMEGEEQ SFLARTFERH FNERPFLNHC CYLFLTKTTR
ERMRMQSNFS SLCRGTLIPK EVRDPEAIRR FMETVAQFER ILNDSGLIRL NRLTEEDLTG
ADHRQGILEQ YLTLSKEEGA SLEDIALGAE QVRVGSKRLS LHTLSDTDDL PAAVASDTRY
EKLSTDRSDC RLSFAAPVGL LLGCNHIYNQ YLFLDSSEEN LQKFEKSARN MHSLARYSRA
NQINREWIEK YLNEAHSLGL SSIRAHFNIM AWSDDPAELK QLKNDCGSAL ALMECKPRHN
TADAATLYWA GMPGNAGDFP CEESFYTFIE PALCLFTQET NYRSSPSPFG IKMADRLTGR
PIHLDISDLP MKRGIITNRN KFILGPSGSG KSFFTNHMVR QYYEQGAHVL LVDTGNSYQG
LCGLINSRTR GEDGVYFTYT EDNPIAFNPF YTDDKVFDIE KRESIKTLIM TLWKRDDEPP
TRSEEVALSN AVNGYIELIR DNGLAPSFNG FYEYVKGDYH EILKEKQVRE KDFDIANFLN
VLEPYYRGGE YDYLLNSDRQ LDLLAKRFIV FEIDAIKDHK ILFPIVTIII MEVFINKMRR
LKGVRKLILI EEAWKAIAKE GMAEYIKYLF KTVRKFFGEA IVVTQEVDDI IKSPIVKESI
INNSDCKILL DQRKYMNKFD DIQAMLGLTD KEKAQVLSIN MNNSPSRLYK EVWIGLGGTQ
SAVYATEVSL EEYLAYTTEE TEKMEVMQAA AELDGNVELA IRHIAKLRWE RENENNQ
|
|---|
| |