Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_2379 |
Symbol | |
ID | 5092111 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | + |
Start bp | 2849834 |
End bp | 2851930 |
Gene Length | 2097 bp |
Protein Length | 698 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 644741807 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_001194725 |
Protein GI | 146300134 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.829657 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAATATT TTTCGACATT ATTATTCTTT GTTTTTTTTA TAACCTGTTC TGCTTTTTCG CAGGGAAAAG TAATTAAATA TACTGTATCC AGCGGAGAAA CAATCAATCA GATTGCTCAA AAATTCAAAG TCACACCTTA CGATATTTAT GAATTAAATC CTGATGCACG CAGCGGAGTA AAGCCTAATA CCGTTTTATT GATTCCGGCT GCGGCAAATA AAAATGCGGA TAAAAAAGAA ACAGCTGAGG CGAAATCGAC AGGTAATTCT AAAGAAATTA TTCACGAAGT ACAGCCAAAA GAAACTTTTT ACAGCATCGA AAAAAAATAT GGCATTTCTG ATGAAGCCTT AAAAGCGGCA AATCCAATTC TTGAAAAGAA CGGGGTTCAG ATTGGTCAGA AACTTGTGAT TCCTGCAAAA GGAGCAGCTC CTAAAAATAC AGCTGCAGCA GAGAAAAAAA CAAAAGAAAA AGGACCAGAA AAATATGTAT ACCATGAGGT TCAGGCAAAA GAAACAAAGT ATTCGATTGC AAAACAATAC AATACAACAG TTGAAGATTT AGAGAAAAGA AATCCTGAAA TCGTTTCCAG CTTACCAGTT GGATACAGAG TTACTATAAA AGGAACTGCT CCAAAAACAG AAACTGCGGC GCCGGTTTCT AAAGCTGAAG AACCTAAGAA AACTGAATCT AAAAAAACAG TTTCTTATAT GGAATATCAA GTAAAACCAA AAGAGACTTT TTATAGTTTA GGTAGAGTTT TTCATTTAAC ACAAGATGAG TTAGTTGCTT TAAATCCGTC ATTATCAGAA GGAGTAAAAG AAGGAATGGT TCTTAAAGTT CCTGCGGGAT ATGTAGCACC GGCACCAATC GTGGCTCAAT CTCAGCCAGC TGAAAAAGTA GCTGTTTCTA CACCGGTAGT AGTTGAAAAA CCTGCAGAAA ATACAGGAGG CGGTATTAAA ATTATAGATA AGGTAAAATC TGAAACTGTT TCGGCAGATC CTGAAATTGT TGAATTAACT AAGAAAAAAG GACAAAATGA CCGCCAGAAA TTAGTTTTAT TACTTCCTTT TAATTTAGCA AAATTACAAA CTGATACAAC CGGAATGGCG GCACGTTTAA AAACAGACAA ATTTTTAAAC ATGACACTTG ATTTTTATTC TGGAGCCATG ATGGCAATAG ACTCTGCTAA AACATTAAAA CTGCCAATTG ATGTTTCGAT TTACGATTCG CAGGAAACTA AAACTACATC GAATATTGCT TCTTTAATTG CGCAGAATAA ATTGCAGGAA GCAGATGCAG TTGTTGGGCC GTTTTACCAA AATAATGCAG AATCTACAGC AAATTCGCTT CGTTTATACA ATGTTCCGGT GATTTCGCCA TTGTCAAAAG ATGCGGCAAA TCCTATCGAT AATTTATATC AGACAGTTCC ATCAAATGAT GTAGTTCGAA ATGCGATTTT TGATTATATG AGAGCTAAAA ACGGAAACAT TGTGGCTGTT GTAGACAAGA AAAAAGAATC GGTTATCAAT TATATCAAAC AAAATCAAAA AGGAGTTGTT TTTGCCGGAT TAACAGAAAC CGGAGGTTTA GATGCTGCCA ATTTAAAAAG CCTTTTACTG CCGACACGTT TGAATTATGT GGTAATGGAA ACAGGAAATA CGGCGATGAT AAAAGCAACT ATAAAAGCTT TGATTGATTC TCAAAAAACA TGTCAGGTGC AGTTGGTAAT TCTAGAACCA AACAGTACGC TTGATACAGA CGAGATTAGT TTTGATAATT TGGTTCAGTT GAAATTAATG TATCCTTCTG TAACTCGCGA CAGTGACGAA CAAGGAGCTG CAATTTTCAA AAAAGAATAT AAATTGAAAA ATAAAGCCTA TCCAAATACA TACGCAACAA GAGGTTTTGA TGTAACTTTT GATACCATGA TGCGTTTGGT TCAGGGAAAA ACGTATCAGG AAACAGCAGA TTTAATGACA ACACAACAGG TTGACAATAA ATTTCAATTT TATAAAAAAG AAGATGGCGG ACACTCAAAT AAAGGTGTCT ACATTTTATA TTACGATTCA GACTTAACTT TAAAAGCAGC AAATTAA
|
Protein sequence | MKYFSTLLFF VFFITCSAFS QGKVIKYTVS SGETINQIAQ KFKVTPYDIY ELNPDARSGV KPNTVLLIPA AANKNADKKE TAEAKSTGNS KEIIHEVQPK ETFYSIEKKY GISDEALKAA NPILEKNGVQ IGQKLVIPAK GAAPKNTAAA EKKTKEKGPE KYVYHEVQAK ETKYSIAKQY NTTVEDLEKR NPEIVSSLPV GYRVTIKGTA PKTETAAPVS KAEEPKKTES KKTVSYMEYQ VKPKETFYSL GRVFHLTQDE LVALNPSLSE GVKEGMVLKV PAGYVAPAPI VAQSQPAEKV AVSTPVVVEK PAENTGGGIK IIDKVKSETV SADPEIVELT KKKGQNDRQK LVLLLPFNLA KLQTDTTGMA ARLKTDKFLN MTLDFYSGAM MAIDSAKTLK LPIDVSIYDS QETKTTSNIA SLIAQNKLQE ADAVVGPFYQ NNAESTANSL RLYNVPVISP LSKDAANPID NLYQTVPSND VVRNAIFDYM RAKNGNIVAV VDKKKESVIN YIKQNQKGVV FAGLTETGGL DAANLKSLLL PTRLNYVVME TGNTAMIKAT IKALIDSQKT CQVQLVILEP NSTLDTDEIS FDNLVQLKLM YPSVTRDSDE QGAAIFKKEY KLKNKAYPNT YATRGFDVTF DTMMRLVQGK TYQETADLMT TQQVDNKFQF YKKEDGGHSN KGVYILYYDS DLTLKAAN
|
| |