Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_2180 |
Symbol | |
ID | 5092799 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | - |
Start bp | 2635076 |
End bp | 2637457 |
Gene Length | 2382 bp |
Protein Length | 793 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 644741609 |
Product | TonB-dependent receptor |
Protein accession | YP_001194527 |
Protein GI | 146299936 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.111173 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGATTACAA AAAAAATCAG CCTTTTTCTA ATTATTATCT TTACGACTTT TACTTCTTTT TCTCAGGATA AATTTACACT AAGCGGTACT ATAAAGGATT CAAAAAACAA CGAAACCTTA ATTGGTGTCA ATATTTATAT TCCAGCTTTA AAAATAGGAA CAACCACAAA CGAATACGGT TTTTATTCTA TAACAGTGCC GCGGGGCGAA CATCAAATAG AAATCAGTTA TATAGGTTAT CAAACCATTC AGCAGACTAT CAATTTAAAT CAAAATACTA AGAATAATTT TTATATCAGC GAAAGCGGTG AAGAACTGCA AGAAGTTATT ATAACCGACA ATAAAGGCAA AATAAATATC AAATCGCCAG AAATGAGCGT GAATAAACTC TCTATTTCAA CCATAAAAAA AATGCCGGTA GTTTTAGGAG AAGTCGATGT TTTAAAATCG ATTTTATTAC TTCCCGGAGT TACAAATGCC GGCGAAGGCG CATCAGGATT TAATGTTCGG GGCGGCGGTG CTGACCAGAA TTTAATTTTG TTAGATGAAG CTACAATTTT TAATTCATCA CACGTTTTCG GGTTCTTCTC AGTCTTTAAT CCAGATGCCA TTAAAGATTT AAAATTATAC AAAGGAGGTA TTCCGGCACG TTTTGGAGGA AGAGCTTCAT CTGTTCTGGA AATTTACCAG AAAGACGGAA GCAGTAAAGA TTTTCATGTA AACGGAGGAA TTGGTTTAAT ATCCAGCCGT CTTCTTGTAG AAGGTCCAAT TGTAAAAGAC AAAGGTTCTT TTTTAATTGG AGGACGTGCT TCTTATGCGC ATTTGTTTTT AAAGCTTTCT GAAGACAACA AAGACAACTC AGCTTATTTT TACGATTTAA ATGCAAAATT CAGTTACAAA TTAAACGATA ATAACAGCTT ATATTTATCC GGATATTTTG GACGCGATGT TTTTAGTCTG AATAAAAGTT TTACCAATAT TTATGGAAAT TCAACTTTAA ATCTTCGCTG GAACCATTTG TACTCAAATA AATTATTTTC GAATTTATCT TTAATTTACA GTGACTATTA TTATGGACTT GATCTGGATT TTGTTGGTTT CAAATGGGAT TCAGGAATCA AAAACTACAA TATCAAATAC GATTTCAAAC ATTATATTTC AGATAAATTC AAATTGAATT ATGGTTTAAA CGGAATTTAT TATGAATTTA ATCCGGGAAC CATTAAACCA AGCAGTACTG ATTCAGGAAT TAATCCGGAT CAATTAGATA AAAAATATGC TTTTGAACCT TCGGTTTACT TAGATGCCGA AAATCAGCTT TCTAAAAAAA TTACGGTTGC TTACGGTTTA CGATACAGTT TATTTTATCG TTTGGGTTCG TCAACTGTTA ATTATTATGA CAATAATAGT CCTGTTGTTT TTAATTCTGA TATGCAGATT TATGAAAAAG GAACTCCTGC TTCAACGAAA TATTTTGGTA AGAATAAAGT AATTCAGGAT TATAATAATC TAGAACCGCG ACTTGCCATA TCGTATCAAT TAAATGAAGA TCAGTCAATA AAAGCGAGTT ATAATCGAAT GGCGCAATAT CTTCAATTAA TTTCAAACAC CTCATCTCCT ACTCCGCTGG ATGTCTGGAT GCCAAGCGAT AATTACATCA AACCACAGAT AGCAGATCAG GTAGCTTTAG GATATTTCCG AAATATTAAA GGAGGAGATT ATTCACTTGA AGTTGAAACT TTTTACAAAA AAATTCAAAA CAGGCTGGAT TATATAGACG GTGCCGATTT AATTGCAAAT AATGCTATCG AGCAGGTAAT TTTAAACGGA AGAATGCGTG CTTACGGTCT AGAAATTATG GTGAAGAAAA ACACTGGAAA ATTCAACGGC TGGATTTCTT ATACTTTATC AAGATCTGAA CAGCAGACAC CGGGAAGAAC TCCTGAAGAA ATTGGAATTA ATGATGGTCA ATGGTACAGT TCTGCTTACG ATAAAACGCA TAATCTGGCT GTAACATCTG CTTATAATTT AAATGAAAAA TGGTCATTTG GCGCTAACTT TGTTTTACAA TCCGGACAGC CGGTTACGTA TCCAAACGGG CAGTATGAAT ACTTAGGAAT TACAGTTCCA AGTTACGGTT TACGAAATGA GAATCGTCTT CCTGCTTATC ACCATTTAGA TATTTCGGCA ACTTTAACAC CAAGAAAAAA TAAAGACCGA AACTGGAAAG GCGAATGGGT TTTCAGTATT TATAATTTAT ATAACCGAAG TAACGCTGCT TCTATTAATT TCAGGCAGAA TTCTGACACA GGAATAAACG AAGCTGTACG ATTTTCAATA TTTGGTATAG TGCCTGCAGT TAGTTACAAT TTTAAATTTT AA
|
Protein sequence | MITKKISLFL IIIFTTFTSF SQDKFTLSGT IKDSKNNETL IGVNIYIPAL KIGTTTNEYG FYSITVPRGE HQIEISYIGY QTIQQTINLN QNTKNNFYIS ESGEELQEVI ITDNKGKINI KSPEMSVNKL SISTIKKMPV VLGEVDVLKS ILLLPGVTNA GEGASGFNVR GGGADQNLIL LDEATIFNSS HVFGFFSVFN PDAIKDLKLY KGGIPARFGG RASSVLEIYQ KDGSSKDFHV NGGIGLISSR LLVEGPIVKD KGSFLIGGRA SYAHLFLKLS EDNKDNSAYF YDLNAKFSYK LNDNNSLYLS GYFGRDVFSL NKSFTNIYGN STLNLRWNHL YSNKLFSNLS LIYSDYYYGL DLDFVGFKWD SGIKNYNIKY DFKHYISDKF KLNYGLNGIY YEFNPGTIKP SSTDSGINPD QLDKKYAFEP SVYLDAENQL SKKITVAYGL RYSLFYRLGS STVNYYDNNS PVVFNSDMQI YEKGTPASTK YFGKNKVIQD YNNLEPRLAI SYQLNEDQSI KASYNRMAQY LQLISNTSSP TPLDVWMPSD NYIKPQIADQ VALGYFRNIK GGDYSLEVET FYKKIQNRLD YIDGADLIAN NAIEQVILNG RMRAYGLEIM VKKNTGKFNG WISYTLSRSE QQTPGRTPEE IGINDGQWYS SAYDKTHNLA VTSAYNLNEK WSFGANFVLQ SGQPVTYPNG QYEYLGITVP SYGLRNENRL PAYHHLDISA TLTPRKNKDR NWKGEWVFSI YNLYNRSNAA SINFRQNSDT GINEAVRFSI FGIVPAVSYN FKF
|
| |