Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_2006 |
Symbol | |
ID | 5094368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | - |
Start bp | 2340980 |
End bp | 2341591 |
Gene Length | 612 bp |
Protein Length | 203 aa |
Translation table | 11 |
GC content | 32% |
IMG OID | 644741432 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001194357 |
Protein GI | 146299766 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.593856 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATAAATG CCGACTACAA CAATAACGCT GTATTAATTG AGTCTCTTAA AAACGGAGAT GAAATGGCAT ATACTTATTT AATCGATACG TATCATCATA AACTTTGCGT TTATGCTAAC AGTCTGGTAA AGAATGTTTA CAGTGCAGAA GATATTGTAC AGAATGTTTT TATTAAGGTT TGGGAACAGC GCACGAGATT AAAACCGGAG CATTCGTTAA AAAGTTTTCT TTATAAAATG ACTTATAACG AGTTTATCGA TTTGTATCGA AAAAACCAGT CTTTGTTTTC ATTAGAAAAA TCGTATTATG ACGCTTTGAA CGGAATTGTT CAGGAAGAAG ATTCAGAAGC TTTTCAGAGG GTTTTAAATG CGGTAAACAA AGAAATTCAG AATCTGCCTC CAAAATGCAA AGAGGTTTTT ATTTTGAGTA AAAAAGAAGG TTTGACTAAT ATCGAAATCG CCGAGCATCT AGATGTTTCT ATAAAAACCG TTGAGGCTCA AATCACTAAA GCTTTTTCTA TTCTAAGAAC TTCCTTAGAA GAAAAGGTAA AAAGTGTTTT GTTTCTTTTA TTTTCGGCTA AAAAAAAATT CAGACTAAGT AAATTAATCT GA
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Protein sequence | MINADYNNNA VLIESLKNGD EMAYTYLIDT YHHKLCVYAN SLVKNVYSAE DIVQNVFIKV WEQRTRLKPE HSLKSFLYKM TYNEFIDLYR KNQSLFSLEK SYYDALNGIV QEEDSEAFQR VLNAVNKEIQ NLPPKCKEVF ILSKKEGLTN IEIAEHLDVS IKTVEAQITK AFSILRTSLE EKVKSVLFLL FSAKKKFRLS KLI
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