Gene Fjoh_2006 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFjoh_2006 
Symbol 
ID5094368 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFlavobacterium johnsoniae UW101 
KingdomBacteria 
Replicon accessionNC_009441 
Strand
Start bp2340980 
End bp2341591 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content32% 
IMG OID644741432 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001194357 
Protein GI146299766 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.593856 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATAAATG CCGACTACAA CAATAACGCT GTATTAATTG AGTCTCTTAA AAACGGAGAT 
GAAATGGCAT ATACTTATTT AATCGATACG TATCATCATA AACTTTGCGT TTATGCTAAC
AGTCTGGTAA AGAATGTTTA CAGTGCAGAA GATATTGTAC AGAATGTTTT TATTAAGGTT
TGGGAACAGC GCACGAGATT AAAACCGGAG CATTCGTTAA AAAGTTTTCT TTATAAAATG
ACTTATAACG AGTTTATCGA TTTGTATCGA AAAAACCAGT CTTTGTTTTC ATTAGAAAAA
TCGTATTATG ACGCTTTGAA CGGAATTGTT CAGGAAGAAG ATTCAGAAGC TTTTCAGAGG
GTTTTAAATG CGGTAAACAA AGAAATTCAG AATCTGCCTC CAAAATGCAA AGAGGTTTTT
ATTTTGAGTA AAAAAGAAGG TTTGACTAAT ATCGAAATCG CCGAGCATCT AGATGTTTCT
ATAAAAACCG TTGAGGCTCA AATCACTAAA GCTTTTTCTA TTCTAAGAAC TTCCTTAGAA
GAAAAGGTAA AAAGTGTTTT GTTTCTTTTA TTTTCGGCTA AAAAAAAATT CAGACTAAGT
AAATTAATCT GA
 
Protein sequence
MINADYNNNA VLIESLKNGD EMAYTYLIDT YHHKLCVYAN SLVKNVYSAE DIVQNVFIKV 
WEQRTRLKPE HSLKSFLYKM TYNEFIDLYR KNQSLFSLEK SYYDALNGIV QEEDSEAFQR
VLNAVNKEIQ NLPPKCKEVF ILSKKEGLTN IEIAEHLDVS IKTVEAQITK AFSILRTSLE
EKVKSVLFLL FSAKKKFRLS KLI