| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_1944 |
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| Symbol | |
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| ID | 5091680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Flavobacterium johnsoniae UW101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009441 |
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| Strand | + |
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| Start bp | 2247544 |
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| End bp | 2251854 |
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| Gene Length | 4311 bp |
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| Protein Length | 1436 aa |
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| Translation table | 11 |
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| GC content | 37% |
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| IMG OID | 644741365 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001194295 |
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| Protein GI | 146299704 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAATA ACAGAAACAA TAATAAAGAT AAGAATCCAG TAAAAAGATT TAACAAAATT
TCTATTGGAT TGGCTTCACC AGAATCTATC TTGAAAGAAT CAAGAGGAGA GGTTTTAAAG
CCAGAAACAA TTAACTATAG AACGCACAAA CCAGAGCGTG ACGGACTTTT CTGCGAAAGA
ATCTTCGGAC CAGTAAAAGA TTTCGAATGT GCTTGTGGTA AGTATAAAAG AATTCGTTAC
AAAGGTATCA TCTGTGACCG TTGTGGTGTT GAAGTTACTG AGAAAAAAGT ACGTCGTGAT
AGAGTAGGAC ACATCAACCT TGTTGTGCCA ATTGCTCACA TCTGGTACTT CCGTTCTCTT
CCAAACAAAA TTGGTTATAT CCTTGGTCTT CCATCTAAGA AATTAGATAT GATCATCTAC
TACGAAAGAT ACGTAGTAAT CCAAGCAGGT ATTGCTAAAA ATGCAGATGG AGAATCTTTA
CAAAGATTAG ATTTCTTAAC TGAAGAAGAA TACCTAAACA TTTTAGATAC TCTTCCGCAA
GAAAATCAAT ATTTAGATGA TTTAGATCCA AATAAATTTG TTGCCAAAAT GGGAGCAGAG
TGTATTATGG ATTTATTAGC TCGTATTGAC TTAGATGCTT TATCTTATGA ATTAAGACAC
AGCGCTAACA ACGAAACTTC TAAACAAAGA AAAACTGAGG CTTTAAAAAG ATTACAAGTT
GTTGAGTCTT TCCGTGAGTC TAACGAAAAC CGCGAAAACC GTCCAGAATG GATGATTATG
AAAGTGGTTC CAGTTATCCC GCCAGAATTA CGTCCGCTTG TGCCACTTGA TGGAGGTCGT
TTTGCAACTT CAGATTTGAA CGACTTATAC CGTCGTGTAA TCATCCGTAA CAACCGTTTG
AAAAGATTAA TGGAGATTAA AGCTCCTGAA GTTATCTTAA GAAACGAAAA ACGTATGTTG
CAAGAATCTG TAGATTCATT ATTTGATAAC ACACGTAAAG CTTCTGCTGT TAAAACAGAA
TCTAACAGAC CATTAAAATC ATTATCTGAC TCATTAAAAG GTAAGCAAGG ACGTTTCCGT
CAAAACTTAC TTGGTAAACG TGTGGATTAT TCTGCTCGTT CGGTAATTGT TGTTGGTCCT
GAGTTAAAAT TATATGAGTG CGGATTGCCA AAAGATATGG CTTCTGAGTT ATACAAACCT
TTCGTTATCC GTAAATTGAT TGAAAGAGGT ATTGTAAAAA CAGTAAAATC TGCTAAGAAA
ATCATTGACA AAAAAGAGCC TGTAGTTTGG GATATCCTTG AAAACGTAAT TAAAGGACAC
CCAGTATTAC TGAACCGTGC TCCTACTTTG CACAGACTTG GTATTCAGGC TTTCCAACCA
AAATTAATTG AAGGAAAAGC GATCCAGTTA CACCCATTAG TATGTACGGC ATTCAACGCC
GATTTCGATG GTGACCAGAT GGCGGTTCAC TTACCATTAG GACCAGAGGC TATTTTAGAG
GCTCAATTAT TAATGTTGGC TTCTCATAAT ATTTTGAACC CTGCAAATGG TGCTCCAATT
ACTGTACCTT CTCAGGACAT GGTCTTGGGT CTGTACTATA TGACCAAAGA ACGTATTTCT
ACAGAAGATC ACATTATTTT AGGTCAAGAT TTGACTTTCT ATTCTGCTGA AGAAGTAAAC
ATTGCATTAA ACGAAGGAAG ATTAGAACTA AATGCTCGTG TTAAAATTAG AGCAAAAGAT
TTTAATGACG CTGGAGAATT AGTGTACAAA ATCATTCAAA CAACTGCAGG ACGTGTATTA
TTTAACGAAG TAGTACCTGA AGCAGCTGGA TATATCAACG ACGTATTGAC TAAGAAAAAC
CTTAGAGATA TTATCGGACA CATTTTAAGT GTGACTGATG TACCTACAAC GGCAGCTTTC
TTGGATAATA TGAAAGATAT GGGTTATAAA TTCGCATTTA GAGGAGGTTT ATCATTCTCT
TTAGGTGATA TTAGAATCCC AGAACAAAAA ACGAAGTTAA TTGCAGATGC AAGAGAACAA
GTTGAAGGTA TCTCAACTAA CTATAACATG GGTCTTATCA CAAATAACGA GCGTTACAAC
CAAGTTATTG ACGTATGGAC TTCAGCAAAT GCTCAGTTAA CAGAATTAGC AATGAAAAAT
ATTAGAGAAG ACCAACAAGG TTTCAACTCT GTATATATGA TGCTTGACTC TGGGGCGAGG
GGTTCTAAGG AGCAGATTCG TCAGTTAACT GGTATGCGTG GTTTGATGGC TAAGCCTAAA
AAATCTACTG CTGGTGGTGG TGAGATTATT GAAAACCCGA TTCTTTCTAA CTTTAAGGAA
GGTCTTTCGA TCCTTGAGTA CTTCATTTCT ACTCACGGTG CTCGTAAAGG TCTTGCGGAT
ACGGCTCTTA AAACGGCCGA TGCTGGTTAC TTGACAAGAA GGCTTCATGA CGTTTCTCAA
GATGTTATTG TTAACATCGA AGATTGTGGA ACTCTTAGAG GTGTTGAAGT TGCTGCATTG
AAGAAAAATG AGGAAATCGT TGAATCTTTA GGAGAGAGAA TTTTAGGACG TGTTGCATTA
CAAGACGTTA TCAATCCTCT TACTAATGAA GTAATGGTTC AATCAGGCCA GCAAATTACT
GAGGCAATTG TGAAAACTAT CGAAGCTTCT CCAATTGAAA AAGTAGAAGT TAGATCTCCA
TTAACTTGTG AGGCTTTAAA AGGTATTTGT GCTAAATGTT ATGGTAGAAA CTTAGCTACT
GGTAAGATGA CACAAAGAGG TGAAGCTGTT GGAGTTATTG CTGCTCAGTC TATTGGAGAG
CCAGGTACAC AGTTAACACT TCGTACGTTC CACGTTGGAG GGGTTGCTGG AGGTATCTCT
GAAGAGTCTA GTATTGTTAC AAGATTCGCA GGTAGACTTG AGATTGAAGA TTTAAAAACA
GTTAAAGGTG AAGACAGTGA AGGTAATGCG GTTGATATCG TAGTATCACG TTCAACTGAA
TTAAAATTAG TTGATGAAGG AACTGGTATC GTCTTAAACA CACATAATAT TCCTTACGGT
TCTAGTATCT TTGTTAAAGA TGGAGAAACT GTTGGAAAAG GAACTGTAAT TTGTAAATGG
GACCCTTATA ATGGTGTAAT TGTTTCTGAG TTTACTGGTA AGATTGCTTA CGAAGATTTA
GAACAAGGAC AATCATTCAT GGTTGAGATC GATGAGCAGA CTGGTTTCCA GGAAAAAGTA
ATTTCTGAGG CTAGAAACAA AAAATTAATC CCAACTTTAT TAGTTTATGG TAAAGAAGGT
GAATTGATTC GTTCTTACAA CTTACCAGTA GGTGCACACT TAATGGTTGA AAATGGTGAG
AAAATTAAAG CAGGTAAAGT ATTAGTAAAA ATTCCTCGTC GTTCTTCTAA AGCAGGCGAT
ATCACGGGAG GTTTACCAAG AATTACTGAG CTTCTTGAGG CTCGTAACCC ATCAAATCCA
GCAGTTGTAT CTGAAATTGA TGGAGTTGTA TCTTTTGGAA AAATTAAGAG AGGTAACCGT
GAGATCGTTA TCGAATCTAA ATTTGGTGAG ATTAAAAAGT ATTTAGTTAA ACTTTCAAGC
CAAATCTTAG TACAAGAAAA TGACTTCGTA AGAGCGGGAG TTCCATTGTC TGATGGTGCA
ATTACACCAG ATGATATCTT AAGAATTCAA GGACCAGCTG CTGTTCAACA GTACTTGGTA
AATGAAATTC AAGAGGTTTA CCGTTTACAA GGGGTAAAAA TTAATGACAA GCACTTTGAG
GTTGTAATTC GTCAAATGAT GCGTAAAGTA AAAGTTGAAG ATCCAGGAGA TACTCTATTT
TTAGAAGATC AATTGATTCA TACTAAAGAC TTTATCCTTC AAAATGATAA ATTGTACGGA
ATGAAAGTGG TAGAAGATGC TGGAGATTCT TCAGTATTGA AACCAGGTCA AATTATTTCT
CCTCGTGAAT TGCGTGATGA AAATTCATTA TTGAAACGTA CAGATAAAAA TCTTGTTGTA
GCAAGAGACG TAATTACTGC AACTGCAACG CCAGTTCTAC AAGGTATTAC AAGAGCTTCG
TTACAAACTA AATCATTCAT TTCTGCGGCT TCATTCCAGG AGACAACGAA AGTACTTAAC
GAAGCTGCAG TAGCTGGTAA AGTAGATGAT CTAGAAGGAT TAAAAGAAAA TGTAATTGTT
GGACACAGAA TTCCTGCGGG AACTGGTATG AGAGAATACG ATAACACTAT CGTAGGTTCT
AAAGACGATT ACAACGAAAT GATGGCTAAT AAAGAAGAAT ACATTTATTA A
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| Protein sequence | MMNNRNNNKD KNPVKRFNKI SIGLASPESI LKESRGEVLK PETINYRTHK PERDGLFCER
IFGPVKDFEC ACGKYKRIRY KGIICDRCGV EVTEKKVRRD RVGHINLVVP IAHIWYFRSL
PNKIGYILGL PSKKLDMIIY YERYVVIQAG IAKNADGESL QRLDFLTEEE YLNILDTLPQ
ENQYLDDLDP NKFVAKMGAE CIMDLLARID LDALSYELRH SANNETSKQR KTEALKRLQV
VESFRESNEN RENRPEWMIM KVVPVIPPEL RPLVPLDGGR FATSDLNDLY RRVIIRNNRL
KRLMEIKAPE VILRNEKRML QESVDSLFDN TRKASAVKTE SNRPLKSLSD SLKGKQGRFR
QNLLGKRVDY SARSVIVVGP ELKLYECGLP KDMASELYKP FVIRKLIERG IVKTVKSAKK
IIDKKEPVVW DILENVIKGH PVLLNRAPTL HRLGIQAFQP KLIEGKAIQL HPLVCTAFNA
DFDGDQMAVH LPLGPEAILE AQLLMLASHN ILNPANGAPI TVPSQDMVLG LYYMTKERIS
TEDHIILGQD LTFYSAEEVN IALNEGRLEL NARVKIRAKD FNDAGELVYK IIQTTAGRVL
FNEVVPEAAG YINDVLTKKN LRDIIGHILS VTDVPTTAAF LDNMKDMGYK FAFRGGLSFS
LGDIRIPEQK TKLIADAREQ VEGISTNYNM GLITNNERYN QVIDVWTSAN AQLTELAMKN
IREDQQGFNS VYMMLDSGAR GSKEQIRQLT GMRGLMAKPK KSTAGGGEII ENPILSNFKE
GLSILEYFIS THGARKGLAD TALKTADAGY LTRRLHDVSQ DVIVNIEDCG TLRGVEVAAL
KKNEEIVESL GERILGRVAL QDVINPLTNE VMVQSGQQIT EAIVKTIEAS PIEKVEVRSP
LTCEALKGIC AKCYGRNLAT GKMTQRGEAV GVIAAQSIGE PGTQLTLRTF HVGGVAGGIS
EESSIVTRFA GRLEIEDLKT VKGEDSEGNA VDIVVSRSTE LKLVDEGTGI VLNTHNIPYG
SSIFVKDGET VGKGTVICKW DPYNGVIVSE FTGKIAYEDL EQGQSFMVEI DEQTGFQEKV
ISEARNKKLI PTLLVYGKEG ELIRSYNLPV GAHLMVENGE KIKAGKVLVK IPRRSSKAGD
ITGGLPRITE LLEARNPSNP AVVSEIDGVV SFGKIKRGNR EIVIESKFGE IKKYLVKLSS
QILVQENDFV RAGVPLSDGA ITPDDILRIQ GPAAVQQYLV NEIQEVYRLQ GVKINDKHFE
VVIRQMMRKV KVEDPGDTLF LEDQLIHTKD FILQNDKLYG MKVVEDAGDS SVLKPGQIIS
PRELRDENSL LKRTDKNLVV ARDVITATAT PVLQGITRAS LQTKSFISAA SFQETTKVLN
EAAVAGKVDD LEGLKENVIV GHRIPAGTGM REYDNTIVGS KDDYNEMMAN KEEYIY
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