Gene Fjoh_1617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFjoh_1617 
Symbol 
ID5090968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFlavobacterium johnsoniae UW101 
KingdomBacteria 
Replicon accessionNC_009441 
Strand
Start bp1865596 
End bp1868445 
Gene Length2850 bp 
Protein Length949 aa 
Translation table11 
GC content36% 
IMG OID644741024 
ProductDNA polymerase I 
Protein accessionYP_001193968 
Protein GI146299377 
COG category[L] Replication, recombination and repair 
COG ID[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains 
TIGRFAM ID[TIGR00593] DNA polymerase I 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.310116 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACTC AAAAACGCCT TTTTCTTCTA GATGCTTATG CATTAATTTT TCGCGGTTAT 
TATGCCTTTA TAAAAAACCC GAGAATCAAC TCAAAAGGAA TGGATACATC TGCAATTATG
GGTTTTATGA ACTCACTTTT AGATGTTATT AAAAGAGAAA AACCAGATCA TTTAGCCGTT
GCTTTTGATA AAGAAGGAAG CCGCGCTAGA ACAGAAATGT TTGCCGAATA TAAAGCTAAC
CGCGACGAAA CTCCCGAAGC TATTAAAATT GCTGTTCCTT ATATTCAGGA ATTATTAAAA
GCAATGCACA TTCCTATTAT TGAACTTGCA GGCTGTGAAG CTGATGATTT AATTGGTACA
ATTGCCAAAC AAGCCGAGAA ACAAAACTAC AAGGTATACA TGGTAACACC TGATAAGGAT
TTTGCGCAGT TGGTTTCTGA AAATATATTT ATGTACAAAC CTGCCCGAAT GGGTAATGGA
ATCGAAATTT GGGGAGTTCC AGAGGTTTTA GCAAAGTTTG AAGTCGAGAG ACCAGAACAG
GTTATCGATT TTCTTGGAAT GATGGGTGAC GCCGTAGATA ATATTCCGGG ATTACCTGGA
GTTGGTGAAG TAACGGCTAA AAAATTCTTG AAAGAATTTG GTTCAATGGA AAATCTTTTG
GCTAATACTG ATAAACTGAA AGGCAAAATG AAAGAAAACA TCGAAGCCAA TAAAGACAAA
GGTATTTTAT CTAAAAAACT GGCGGCTATT ATGTGTGACT GCGATGTCGT TTTTAATGAA
GATGATTACG AACTTTCTCG TCCGGATATT GAAAAAACCG ATGCTATTTT TCAGGAACTG
GAATTTAGAA GAATGGCAGA ACAATTTGAT AATTTGTTTA AAGTTGGCGC AGGAAGTGAA
TCAGGATCAA CTCCGGCTCA GGATGCTAAA TTATACAAAA AACCACAGCC AAAGAATGAA
GACCAATTTG ATCTTTTTGG CGGAGGCGGC ACCACTCTTG ATGAAAATGC CGAAGCTGCA
AGAAATTCAT TTTATAATAC TTTAGAAAAT ACTGAACATT CTTATCAGAC CGTTCAGGGC
GATTTAGGAA TTAAATTGCT TTTACAAAAT TTACAAAAAC AAACTTCGGT TTGTTTTGAT
ACCGAAACCA CAGGAATTGA TGCTTTGCAT GCAGAACTTG TAGGAATGTC TTTTTCTTAC
GAAAAAGGAA AAGCATTTTA TGTTCCGTTT CCGGAAAGTC AGGAAGAAGC AAAAGTTTTG
ATTGACAAGT TTGTTCCATT TTTTGAAAAT GAAAACATTG AGAAAATTGG TCAAAATTTA
AAATACGATT TAAAAATCCT TTCTAATTAC GGTGTTACTG TAAAAGGAAA ACTTTTTGAC
ACGATGATCG CACACTATCT AATTAATCCG GATATGCGTC ATAATATGGA TATTTTAGCC
GAAACGTATT TGAAATATTC TCCAAAATCT ATTGAAACTT TAATTGGTAA AAAAGGAAAA
AATCAGCTTT CTATGCGCGA TGTTCCTTTA GAAGATATTA AAGAATACGC CGCAGAAGAT
GCCGATGTAA CTTTACAATT AAAAGAAATC TTTACAGCCG AATTAGAAAA AACCGAGACC
AAAAAGCTGT TTGACGAAAT TGAAATTCCA TTAGTAAGCG TTTTAGCCGA CATGGAAACA
GAAGGAATTC GTCTGGATGT TGAGTTCTTA AAACAAATGT CTAAAGAGAT GGACGTTGAA
ATCAAATCTT TAGAAGAACA GATATACGAA ACTGCCGGCG AGAAATTCAA TCTGGCTTCT
CCAAAACAAT TAGGAGACAT TTTATTTGAT AAACTTAAAA TTGGCGGCGC AAAACAAAAG
AAAACCAAAA CAGGTCAATA TGCAACCGGA GAAGAAGTTT TGACTTATTT AGCCAACGAT
AATCCAATCG TAAAACAAAT TCTTGATTGG CGTCAAATGG TAAAACTGCA AAGCACTTAT
ATTTTAGCTT TACCAGAACA GGTTGACAAA AAGACTTTAC GTGTTCATAC TGATTATATG
CAGACGGTTG CCGCAACAGG ACGTTTAAGT TCTAATAATC CAAACTTGCA AAACATTCCA
ATTCGTACCG AAAGAGGACG TCAGATTCGT AAAGCTTTTG TAGCGCGCGA TGAAAATTAT
ACTTTAATTT CTGCCGATTA CTCTCAAATT GAATTGCGAA TTATTGCAGC CTTAAGCGGT
GAAGAAAATA TGATCGCTGC TTTCCAAAAT GGAGAAGATA TTCACCGAGC TACTGCTGCA
AAAGTTTTTG ATGTAGCTTT AGAAGAAGTT TCACGCGAGC AAAGAAGTAA TGCTAAAACC
GTAAACTTTG GAATTATCTA TGGAGTTTCT GCTTTTGGAT TAAGTAATCA GACTTCACTT
TCAAGAAGCG AAAGCGCTGC TTTGATCGAT GCTTATTACA AAACATATCC GCGTCTTAAA
TCTTATATCT CAGAACAAGT TGATTTTGCT CGTGAAAAAG GCTACGTACA AACCATTTTA
GGCCGCCGTC GTTACTTAAA AGATATTAAT TCTGCGAATG CTGTCGTAAG AAGCGCTGCC
GAAAGAAATG CTGTAAATGC TCCAATTCAG GGAAGTGCTG CTGATGTAAT TAAAATTGCG
ATGATCAACA TTCACAAAAA ACTTCGCGAA GAAAATTGGA AATCTAAAAT GTTGCTTCAG
GTTCATGATG AGCTTGTGTT CGATGTTCAC AATGATGAAC TCGAAAAAAT CCAGCCAATG
ATTAAACACG AAATGGAAAA TGCATTTAAA ATGTCTGTTC CTTTAGAAGT TGAACTTGGA
TTAGGTAAAG ACTGGTTAGA AGCCCACTAA
 
Protein sequence
MSTQKRLFLL DAYALIFRGY YAFIKNPRIN SKGMDTSAIM GFMNSLLDVI KREKPDHLAV 
AFDKEGSRAR TEMFAEYKAN RDETPEAIKI AVPYIQELLK AMHIPIIELA GCEADDLIGT
IAKQAEKQNY KVYMVTPDKD FAQLVSENIF MYKPARMGNG IEIWGVPEVL AKFEVERPEQ
VIDFLGMMGD AVDNIPGLPG VGEVTAKKFL KEFGSMENLL ANTDKLKGKM KENIEANKDK
GILSKKLAAI MCDCDVVFNE DDYELSRPDI EKTDAIFQEL EFRRMAEQFD NLFKVGAGSE
SGSTPAQDAK LYKKPQPKNE DQFDLFGGGG TTLDENAEAA RNSFYNTLEN TEHSYQTVQG
DLGIKLLLQN LQKQTSVCFD TETTGIDALH AELVGMSFSY EKGKAFYVPF PESQEEAKVL
IDKFVPFFEN ENIEKIGQNL KYDLKILSNY GVTVKGKLFD TMIAHYLINP DMRHNMDILA
ETYLKYSPKS IETLIGKKGK NQLSMRDVPL EDIKEYAAED ADVTLQLKEI FTAELEKTET
KKLFDEIEIP LVSVLADMET EGIRLDVEFL KQMSKEMDVE IKSLEEQIYE TAGEKFNLAS
PKQLGDILFD KLKIGGAKQK KTKTGQYATG EEVLTYLAND NPIVKQILDW RQMVKLQSTY
ILALPEQVDK KTLRVHTDYM QTVAATGRLS SNNPNLQNIP IRTERGRQIR KAFVARDENY
TLISADYSQI ELRIIAALSG EENMIAAFQN GEDIHRATAA KVFDVALEEV SREQRSNAKT
VNFGIIYGVS AFGLSNQTSL SRSESAALID AYYKTYPRLK SYISEQVDFA REKGYVQTIL
GRRRYLKDIN SANAVVRSAA ERNAVNAPIQ GSAADVIKIA MINIHKKLRE ENWKSKMLLQ
VHDELVFDVH NDELEKIQPM IKHEMENAFK MSVPLEVELG LGKDWLEAH