Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_1433 |
Symbol | |
ID | 5092439 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | - |
Start bp | 1643317 |
End bp | 1644180 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 644740840 |
Product | RpoD family RNA polymerase sigma factor |
Protein accession | YP_001193784 |
Protein GI | 146299193 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGACAAC TTAAAATCAC CAAGCAGGTA ACCAATCGTG AAACTGCATC GTTAGATAAA TATCTACAAG AAATCGGAAA AGTTGACCTA ATTACCGCTG ATGAAGAGGT AGAATTAGCA CAAAGAATAA AGGCTGGTGA TCAAAGAGCT TTAGAAAAAT TAACAAAAGC CAACCTACGT TTCGTTGTAT CGGTTGCTAA ACAATATCAA AACCAAGGAT TAACTCTTCC TGATTTAATT AATGAAGGAA ACTTAGGGCT TATCAAAGCA GCACAGCGTT TTGATGAAAC TCGTGGTTTT AAATTCATTT CTTATGCCGT ATGGTGGATT CGTCAATCGA TTCTTCAGGC TCTTGCAGAA CAATCACGTA TTGTACGTTT ACCATTAAAC AAAATTGGTT CTATCAATAA AATCAACAAA ATGTATGCAT TATTAGAGCA GTCTAATGAG CGTCCGCCTT CTGCTGAAGA AATTGCAAAA GAACTTGACA TGACTGTAAA TGACGTAAAA GAGTCTATGA AAAACTCTGG TCGTCACTTA TCAATGGATG CACCTCTTGT TGAAGGTGAA GATTCTAACC TTTACGACGT ATTACGTTCT GGAGAATCTC CAAACCCAGA CAGAGAGTTA ATTCACGAAT CATTACGTAC TGAAATCGAA CGTTCATTAG AAACATTAAC GCCAAGAGAG GCAGATGTTG TTCGTTTGTA TTTTGGACTT GGCGATCAGC ACCCAATGAC TTTAGAAGAA ATTGGAGAAA CTTTCGACTT AACTCGTGAG CGTGTTCGTC AGATTAAAGA AAAAGCAATC CGTAGATTAA AACATACTTC TAGAAGTAAA ATTCTTAAAA CTTATCTTGG TTAA
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Protein sequence | MRQLKITKQV TNRETASLDK YLQEIGKVDL ITADEEVELA QRIKAGDQRA LEKLTKANLR FVVSVAKQYQ NQGLTLPDLI NEGNLGLIKA AQRFDETRGF KFISYAVWWI RQSILQALAE QSRIVRLPLN KIGSINKINK MYALLEQSNE RPPSAEEIAK ELDMTVNDVK ESMKNSGRHL SMDAPLVEGE DSNLYDVLRS GESPNPDREL IHESLRTEIE RSLETLTPRE ADVVRLYFGL GDQHPMTLEE IGETFDLTRE RVRQIKEKAI RRLKHTSRSK ILKTYLG
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