Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_1408 |
Symbol | |
ID | 5093191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | + |
Start bp | 1610261 |
End bp | 1613134 |
Gene Length | 2874 bp |
Protein Length | 957 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 644740814 |
Product | alpha amylase, catalytic region |
Protein accession | YP_001193759 |
Protein GI | 146299168 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAA CTTTACTATC AATATTTTTA TTGATGGCAG TAACAGTTTT TGCCCAGCAG CAAACCGTTA CTTATTCAAT AAACCCTCCC ACTTTTGAAG ATACTACGCC AATTACAATA ACAATTAATG GTACCAGTAT TAATGAAAGT ACGTGGGGAG TTACAGGTAA TGCATTGTAT CTTTGGTCAT GGTCTTATGA TGTAAATGAT ACCAACCAAA TGGATTCTCC GTCTAACGGA TCATGGACTT CTTCAAATGA AGCTGCAAAG TTTACCTATA ATGCAGGTAC TGATACTTAT ACTAAAACTT TTACACCGTC TGTATATTTT GGACGAAATG GAATTGGCAG AATAGGATTT TTGGTTAAAG CAAAAGACGG AAGCGGCAGC AAACAATCTC AGGATATTGT TGTCGAAGTT GGATCTTTTC AGGTAAACCT AACTTCACCT GTAGAAAATA GCGCTTCAAT TATAGCGTCT GGTTCCAATT TTAATATTGC AGCCACAAAT ACAAACGGAG CGGCAAGCTA TTCGTTAAAA GCAAATGGAA CAGTAATAAA TACCAATGCA AGTACTGCAA GTTATTCTTA TTCTCATATA AATGTTACTA ATAATCAAAC GTATGAATTG AGTGTAACTC AGGGATCGAC TACAATTGTA AAAAAGTTTT CAGTTGTGGT AAATCCAAAC ACAGTTTCTC AAACAATGCC TGCAGGATTA GTTGATGGAA TTAATTATAA TTCCAATGAT ACTTCAAAAG CAACATTGGT TCTTGATGCT CCTTTAAAAG ATTTTGTTTA CGTTGCCGGA AGTTTCAATA ACTGGCAGCC AACTTCGGCG TATGCCATGA AAAAAGATCC TGTTTCGGGA AAATTTTGGT TAGAATTAAC CGGATTGGTT TCGGGAGTAA ATAATACCTA TCAGTATTGG GTTGTAGATG CTTCACCTCT TACCGGTTCT CCATCTTTAG TAAAAACGGC CGACCCTTAT TCTACTTTGG TTTTGTCTCC GTATGATGAT CCGTGGATTC CGGCATCTTC TTATCCAAAT TTACCAGCTT ATCCAGCAGG ACAGCAGTTT GAAGTTACGG TTCTAAAAAC TGGTCAGACT CCTTATAATT GGCAGGTAAC TAATTTTACA AAGCCCGAAA AAGAAAAACT GGTTATTTAT GAAGTTTTGG TTCGAGATTT TGATGCAGCA AGAAATTACC AAAGTATAAT TGACAAAATC GATTATTTCA AAAACCTTAA AATAAACGCT ATCGAATTAA TGCCGGTAAT GGAATTTGAA GGTAATGAAA GCTGGGGTTA TAATACTTCT TTTCACATGG CTTTGGACAA GTTTTATGGA ACATCGGATA AATTAAAAGA ACTAATAGAT GTATGTCATC AAAACGGAAT TGCCGTTATT CTTGATGTGG CTTTAAATCA TGCTTTCGGA AGAAATCCAA TGGTTAGAAT GTGGATGAAC GATCCTGACG GTGATGGTTT TGGTTCACCA ACAGCCGAAA ATCCATACTT TAATACAGTT GCAAAACATA CATTTAGTGT TGGAGAAGAC TTTAATCATC AATCAACAAG AACACAATAT TATGTAGAGC GTGTAATTAA GCAATGGATT CAGGAATATA AAATTGATGG TTTTAGATGG GATTTAACAA AAGGATTTAC ACAGGCTTGT ACAGCCTCAG ATCAATCTTG TACAAATGCA TACCAGCAAG ACAGGGTAGA TATTTTAAAG AAATATGCTG ATTATTCATG GAGTCTGGAT CCAACGCATT ATACCATTTT TGAGCATTTA GGAACTGAAG CCGAAGAAAA ACAATGGGCC GATTACAGAG TAACAGAAAC TCCAAGTAAA GGAGTTATGA TGTGGGGTAA AATGACAGAT CCTTACAATC AATTGTCTAT GGGGTATGCT TCTGAAAGTA ATATTTCGAA AATGTCAAGT GCCAATCGTG GTTTTGCTGC AAACCGTTTA ATAGGTTATG CCGAAAGTCA TGACGAAGAA CGTTTGATGT ATAAAAATGT GCAATACGGA GCTTCAAACA GTGCTTATAA TGTAAAAACA TTAAATACCG CTTTATCCAG AATGTCGGCA ATTGGAGCAG TTTCATTATT AGTTCCAGGA CCAAAAATGA TTTGGCACTT TGGAGAACTG GGCTGGGAGA GTTCAATTTT TACCTGTAAT GATAATTCTG TAAATACAGA TTCAGATAGT ACAGGCGGAG ATTGTAAACT AGATACCAAA CCACAGCCTC AGTGGGTAAA TAACTGGTTA GGAAATTCAA ACCGTAATAA AATTTACAAC GATTGGGCTA AGATGATTAC ACTAAAAAAG GCAGAACCTG TTTTTTTAGG AACTTCAACA ATTCCAAATT CTAATTCGCT TACAGTAAAC ATTAAAATAA CCAATGCAGG TTTAACTTCG GCACAATTAA AAGACGTTTT GATTTTAGCC AATTTTGACG TTACAGCGCA AAACGTTTCG ACAGGTTTTC CGTATGCAGG AACTTGGTAC AATTTAATGG ATAATACTAC AATAAATGTT ACTGATGTAA ATGCTCCGAT AAATTTACCT GCAGGTGAAT ATAGAATTTA TGGAAACAAA ACTGCCAATT TAGCTATCGA AGATTTTGAA AAAGGAAGCA CGGTGAATTT ATATCCAAAT CCGGTTTCAA ATCATTTCAC TTTAAGTACC GCAGTTTCAA AAGTTCAGAT TTATTCAGTT TCAGGACAAT TTGTAAAAAG CTTTGCTTCA AACGGAAATG TTGATTTTCA ATTTGGCGTA AGTGAATTAC AAACAGGTTT GTATATCGTA AAAGCTTCAG ATGAAAATGG TAAAATACAG GTAATGAAGT TTATTAAAAA ATAA
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Protein sequence | MKKTLLSIFL LMAVTVFAQQ QTVTYSINPP TFEDTTPITI TINGTSINES TWGVTGNALY LWSWSYDVND TNQMDSPSNG SWTSSNEAAK FTYNAGTDTY TKTFTPSVYF GRNGIGRIGF LVKAKDGSGS KQSQDIVVEV GSFQVNLTSP VENSASIIAS GSNFNIAATN TNGAASYSLK ANGTVINTNA STASYSYSHI NVTNNQTYEL SVTQGSTTIV KKFSVVVNPN TVSQTMPAGL VDGINYNSND TSKATLVLDA PLKDFVYVAG SFNNWQPTSA YAMKKDPVSG KFWLELTGLV SGVNNTYQYW VVDASPLTGS PSLVKTADPY STLVLSPYDD PWIPASSYPN LPAYPAGQQF EVTVLKTGQT PYNWQVTNFT KPEKEKLVIY EVLVRDFDAA RNYQSIIDKI DYFKNLKINA IELMPVMEFE GNESWGYNTS FHMALDKFYG TSDKLKELID VCHQNGIAVI LDVALNHAFG RNPMVRMWMN DPDGDGFGSP TAENPYFNTV AKHTFSVGED FNHQSTRTQY YVERVIKQWI QEYKIDGFRW DLTKGFTQAC TASDQSCTNA YQQDRVDILK KYADYSWSLD PTHYTIFEHL GTEAEEKQWA DYRVTETPSK GVMMWGKMTD PYNQLSMGYA SESNISKMSS ANRGFAANRL IGYAESHDEE RLMYKNVQYG ASNSAYNVKT LNTALSRMSA IGAVSLLVPG PKMIWHFGEL GWESSIFTCN DNSVNTDSDS TGGDCKLDTK PQPQWVNNWL GNSNRNKIYN DWAKMITLKK AEPVFLGTST IPNSNSLTVN IKITNAGLTS AQLKDVLILA NFDVTAQNVS TGFPYAGTWY NLMDNTTINV TDVNAPINLP AGEYRIYGNK TANLAIEDFE KGSTVNLYPN PVSNHFTLST AVSKVQIYSV SGQFVKSFAS NGNVDFQFGV SELQTGLYIV KASDENGKIQ VMKFIKK
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