Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fjoh_1120 |
Symbol | araD |
ID | 5090198 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Flavobacterium johnsoniae UW101 |
Kingdom | Bacteria |
Replicon accession | NC_009441 |
Strand | + |
Start bp | 1265710 |
End bp | 1266411 |
Gene Length | 702 bp |
Protein Length | 233 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 644740520 |
Product | L-ribulose-5-phosphate 4-epimerase |
Protein accession | YP_001193472 |
Protein GI | 146298881 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTTCTC TTTATAAAGA TTTAAAACAA GAATGTTACG AAGCCAACAT GCAGTTAAAT GCATTGAATT TGGTAGTGTA CACTTTTGGA AATGTAAGTG CCGTAGACAG AAAAAATGGT GTTTTTGCCA TTAAACCAAG CGGTGTTCCT TACGAAGATT TAAAACCGGA AGATATTGTA ATTGTCGATT TTGACAACAA TGTAATCGAA GGCACAATGC GTCCGTCATC AGACACTAAA ACGCATGCTT ATTTATACAA ACACTGGCCA AATATTGGAG GAGTTGCACA TACACACGCA ACCTATTCTG TGGCTTGGGC ACAATCTCAA TTGGATATTC CAATTTTCGG AACAACGCAT GCCGATCATT TAACTGCTGA CATTCCGTGT GCGCCACCAA TGGCTGATTC TCTTATCGAA GGAAACTACG AACACAATAC TGGAATTCAA ATTCTGGATT GTTTCAAAGA AAAAAATCTT TCTTATGAAG AAGTAGAAAT GATTTTGATT GGAAATCATG GTCCATTTGC ATGGGGAAAA AATGCAGCAA AAGCAGTTTA TAACAGCAAG GTTCTGGAAG TTGTGGCCGA AATGGCATAT CTGACTTTGC AAATAAACCC AAACGCGCCA AGATTAAAAG ATTCATTAAT AAAGAAACAT TACAATCGTA AACACGGAAA AGATTCGTAT TACGGACAGT AA
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Protein sequence | MSSLYKDLKQ ECYEANMQLN ALNLVVYTFG NVSAVDRKNG VFAIKPSGVP YEDLKPEDIV IVDFDNNVIE GTMRPSSDTK THAYLYKHWP NIGGVAHTHA TYSVAWAQSQ LDIPIFGTTH ADHLTADIPC APPMADSLIE GNYEHNTGIQ ILDCFKEKNL SYEEVEMILI GNHGPFAWGK NAAKAVYNSK VLEVVAEMAY LTLQINPNAP RLKDSLIKKH YNRKHGKDSY YGQ
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