Gene Fjoh_1107 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagFjoh_1107 
Symbol 
ID5090185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameFlavobacterium johnsoniae UW101 
KingdomBacteria 
Replicon accessionNC_009441 
Strand
Start bp1248466 
End bp1249197 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content35% 
IMG OID644740507 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_001193459 
Protein GI146298868 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTGTG TATTAGTAAC AGGCGGTTCG AGAGGAATTG GAAGTGCTAT TTGTAAAAAA 
TTAGCCGTTG AATCTAATTA TCATATTCTG ATTAATTATC ATTCAAACAA AACTGCCGCC
GAAGAAACAT TACAAGAAAT ACAAAAATTA GGCGCAACCG GAGAAATTTT AGGTTTTGAT
GTTGCCAATT TTGAGCAGGT TCAAGACGTT CTTACACAAT GGCAGGAAGC AAATCCTGAA
AAATTAGTAG AAGCGATTGT AAATAATGCC GGAATTACAA AAGATGGTCT TTTTATGTGG
ATGACACCGC AGGACTGGAA CAGTGTTATG AATACAAGTG CAAACGGATT TTTTAATGTA
ACGCAGTTTT TTATTCAAAA AATGCTTCGC AATAAATATG GCCGAATTGT AAATGTTGTA
TCAGTATCTG GTGTAAAAGG AACTGCAGGA CAAACCAATT ATTCAGCAGC AAAAGGTGCT
ATTGTTGCTG CAACAAAAGC ATTGGCACAA GAAGTAGCAA AACGTAACAT TACAGTAAAT
GCTGTTGCAC CGGGTTTTAT TAAAACCGAT ATGACAAGTG AACTGGATGA AAAAGAATTA
TTAAAACTGA TTCCAGTAAA TCGTTTTGGC GAAGCCGAAG AAGTAGCAGA TTTGGTAAGC
TTTTTGATTT CAAAAAAATC AAGTTACATT ACCGGAGAAA TTATTAATAT AAATGGCGGA
ATATATTCTT AA
 
Protein sequence
MKCVLVTGGS RGIGSAICKK LAVESNYHIL INYHSNKTAA EETLQEIQKL GATGEILGFD 
VANFEQVQDV LTQWQEANPE KLVEAIVNNA GITKDGLFMW MTPQDWNSVM NTSANGFFNV
TQFFIQKMLR NKYGRIVNVV SVSGVKGTAG QTNYSAAKGA IVAATKALAQ EVAKRNITVN
AVAPGFIKTD MTSELDEKEL LKLIPVNRFG EAEEVADLVS FLISKKSSYI TGEIININGG
IYS