| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_1017 |
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| Symbol | |
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| ID | 5090608 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Flavobacterium johnsoniae UW101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009441 |
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| Strand | - |
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| Start bp | 1159913 |
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| End bp | 1162093 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 644740417 |
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| Product | ribonuclease R |
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| Protein accession | YP_001193369 |
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| Protein GI | 146298778 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTAAGA AAATTAGAAA GCCGATAAAA AAAGAGAAAG ATTTCTCTGG GAAGATCCTT
AAAATTTTAT CGCAGAATGC CAATAAGCCA TTTAATTACA GACAGATAGG AGCGAAGTTA
GAACTTGACG ATACAAAAAG CAGAAACCAG ATTATCAAAG ACTTAAAGAT TCTGGCTGCA
CAAAAGAAAA TTATAGAAAC AGAACCTGGA AAATATTTAG TTAAAGCTGT TAGTCAGGAT
TACTACGAAG GAACGATAGA TATGACGAGC AGAAAAACGG CATATTTTAT TTGTGATGAA
TTTGAAGAAG ATGTTTTTAT TCCGACCAAT AATTTGAATC GTGCTTTAGA CAAAGACAAA
GTAAAAGTTT ACGTTTATAA CCGAAGAAAA GGAAAAAGAC CTGAAGGTGA AGTAATTGAA
GTAATTGAAA GAGATAAAAC AGAGTTTGTT GGTGTAATTG ACATTCAGCC AAACTTTGCT
TTTGTTTCTA CTGCCAATCC AAAAATGTAC ACCGATATTT TTATTCCAAA AGATAAATTG
GGAGAAGCAG AAAACGGTGA TGTTGTTTTA GTTAAGATTG AAGACTGGCC TAAAAGAGCT
GATAGTCCGT TTGGATCTGT AATTCGTGTT TTAGGAAAAC CTGGAGAACA CAATACAGAA
ATTCATGCTA TTCTGGCTGA ATATGGACTG CCATCTGATT TCCCGGTAGA AGTAGAGGTA
TATGCTCAAA AGCTGGATAC CTCAATTCAG GAATCAGAGA TTGCAAAACG TCGTGATATG
CGTGATACAC TTACGTTTAC GATAGATCCA AAAGATGCAA AGGATTTTGA TGATGCCTTG
TCTTTCAAAA AGTTAGAGAA TGGAAACTTT GAAATTGGAA TCCATATTGC CGATGTTTCG
TATTATTTAG AAGAAGGAAC CATTCTTGAT GATGAAGCGT ACCAAAGAGC AACTTCAGTT
TATTTGGTAG ATAGAGTAGT GCCAATGCTT CCGGAAGTAT TGTCTAACTT TGCCTGTTCA
CTTCGTCCGA ATGAAGAAAA ATATACATTC TCTGCTATAT TTGAAGTTTC GCCAACTGCA
CAAGTTATCA ACCAATGGTT TGGAAGAACG GTAATTTATT CAGATCAGCG TTTTGCTTAC
GAAGAAGCAC AATATATCAT TGAAACAAAA GATAATACAA TTCCGGTTGA TGTTTCTATT
ACCGGAGAAT CGTATGTGGT TTCAGATGAA ATTAGAGAAG CAACTTTGAA ATTAGATGAA
TTAGCGAAGA TTTTAAGAAA GAAAAGAATG CAGCAAGGTG CTATTTCTTT TGATAAAGTT
GAAGTTAAAT TTAATCTTGA TGCAGAAGGA GAACCAGAAG GAGTTTACTT CAAAATCTCA
AAAGATGCCA ATCATTTGAT TGAAGAATTT ATGCTTTTGG CAAATAGAAA AGTAGCTGAA
TACATTGGTA AACAAAAGAA AACCTTTGTT TATCGTATTC ACGACGAACC AAACGAAGAT
AAGTTAATTG CAATGCAAAC TGTAATTGCT AAATTTGGTT ATAAAATTGA TTTTAGAAAT
AAAGGTGATA TTGCCAAATC ATTGAATTCT TTAATGGAAG AAGTAAATGG TAAAAAAGAG
CAAAACTTAA TTGATACTCT TGCAATTAGA AGTATGAGCA AAGCCAAATA TTCAACAGAT
AATATTGGTC ATTATGGTTT AGCTTTTGAT TATTACAGCC ATTTTACATC GCCAATCCGT
CGTTATCCTG ACGTTATGGT ACACAGATTG CTGCAATATT ATCTGGATGG AGGAGCTTCT
GTAGATGAAG AAACCTACGA AACAAAATGT CTGCATTGTT CGAACATGGA AAGTTTAGCG
ACTAATGCTG AACGTGATAG TATCAAATAC ATGCAGGTTA AATACATGCA GGATCATCAG
GACGAAGAAT TCCTTGGTGT TATTTCTGGT GTTACCGAAT GGGGAATTTA TGTTGAAATC
GTTTCTAATA AATGCGAAGG AATGGTAAGA ATCAGAGAAA TAAAAGATGA TTACTATACC
TTCGATGAAA GACAATATGC TTTGGTTGGT GCTACTTCAA ACAGCATTTT GCAATTAGGG
GATGAAATTT ATGTTAAAGT AAAAAATGCC GACTTAGTGA AAAAACAACT GGATTTTCAT
TTTTTAAGAC GAGCAGAATA A
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| Protein sequence | MSKKIRKPIK KEKDFSGKIL KILSQNANKP FNYRQIGAKL ELDDTKSRNQ IIKDLKILAA
QKKIIETEPG KYLVKAVSQD YYEGTIDMTS RKTAYFICDE FEEDVFIPTN NLNRALDKDK
VKVYVYNRRK GKRPEGEVIE VIERDKTEFV GVIDIQPNFA FVSTANPKMY TDIFIPKDKL
GEAENGDVVL VKIEDWPKRA DSPFGSVIRV LGKPGEHNTE IHAILAEYGL PSDFPVEVEV
YAQKLDTSIQ ESEIAKRRDM RDTLTFTIDP KDAKDFDDAL SFKKLENGNF EIGIHIADVS
YYLEEGTILD DEAYQRATSV YLVDRVVPML PEVLSNFACS LRPNEEKYTF SAIFEVSPTA
QVINQWFGRT VIYSDQRFAY EEAQYIIETK DNTIPVDVSI TGESYVVSDE IREATLKLDE
LAKILRKKRM QQGAISFDKV EVKFNLDAEG EPEGVYFKIS KDANHLIEEF MLLANRKVAE
YIGKQKKTFV YRIHDEPNED KLIAMQTVIA KFGYKIDFRN KGDIAKSLNS LMEEVNGKKE
QNLIDTLAIR SMSKAKYSTD NIGHYGLAFD YYSHFTSPIR RYPDVMVHRL LQYYLDGGAS
VDEETYETKC LHCSNMESLA TNAERDSIKY MQVKYMQDHQ DEEFLGVISG VTEWGIYVEI
VSNKCEGMVR IREIKDDYYT FDERQYALVG ATSNSILQLG DEIYVKVKNA DLVKKQLDFH
FLRRAE
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