| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_0946 |
|---|
| Symbol | |
|---|
| ID | 5091360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | + |
|---|
| Start bp | 1058440 |
|---|
| End bp | 1059465 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644740346 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_001193299 |
|---|
| Protein GI | 146298708 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAAAA ACGACCTATT TTTAAAAGCA TTAAAAGGAG AAACCGTTCA GCGTCCGCCA
GTATGGATGA TGCGTCAAGC TGGAAGATAT TTACCGGAAT TCATCGAATT ACGTGATAAA
TATGATTTCT TCACACGTTG TCAGACTCCA GAATTAGCTG CTGAAATTAC TGTACAGCCA
ATCCGCAGAA TTGCTCCAGA TGCCGCTATT TTGTTCTCAG ACATTTTAGT TGTTCCGCAA
GCAATGGGAA TCGAAGTTTT AATGAAAGAA AATATCGGTC CATTCATCCC AAATCCAATT
CGTTCAATGG CTGATGTTCA ACGAGTTTAC GTTCCGGATA TTCAGGAAAG TCTTGGTTAT
GTAATGGATG CAATCAAATT GACTAAAGAA ATGCTGAACG ACGAAGTTCC ATTAATTGGT
TTTGCTGGTT CGCCATGGAC AATTTTCTGC TACGCTGTTG AAGGAAGAGG TTCTAAGAGT
TTTGATATGG CAAAAGGATT CTGCTTTTCA AATCCGGTTG CAGCACATAC TTTATTGCAA
AAAATCACTG ATACTACAAT TTTATACTTA AAAGAAAAAG TAAAAGCGGG AGTTGATGCC
GTTCAGATTT TTGATTCTTG GGGAGGAATG CTTTCTCCTG TTGATTATCA GGAATTCTCA
TGGAAATACA TCAACCAAAT CGTCGAAGCT TTGGCTGATT TAACTCCGGT TATTGTTTTC
GGAAAAGGAT GCTGGTTTGC TCTTGGCGAA ATGGGTAAAA GCCGTGCTTC TGCTCTTGGA
GTAGACTGGA CTTGTTCTGC AAGAAATGCC CGTTACTTGT CTGGTGGAAA CATTACACTA
CAAGGAAATT TTGATCCTTC AAGACTGCTT TCTCCAATTC CAACAATCAA GAAAATGGTT
CACGAAATGA TCGATGAGTT TGGAAAAGAT AAATATGTTG TAAATTTAGG ACACGGAATT
TTACCAAATA TTCCTGTAGA TCACGCAAAA GCGTTTATCG ACGCGGTTAA GGAATACGGA
CAATAG
|
|---|
| Protein sequence | MLKNDLFLKA LKGETVQRPP VWMMRQAGRY LPEFIELRDK YDFFTRCQTP ELAAEITVQP
IRRIAPDAAI LFSDILVVPQ AMGIEVLMKE NIGPFIPNPI RSMADVQRVY VPDIQESLGY
VMDAIKLTKE MLNDEVPLIG FAGSPWTIFC YAVEGRGSKS FDMAKGFCFS NPVAAHTLLQ
KITDTTILYL KEKVKAGVDA VQIFDSWGGM LSPVDYQEFS WKYINQIVEA LADLTPVIVF
GKGCWFALGE MGKSRASALG VDWTCSARNA RYLSGGNITL QGNFDPSRLL SPIPTIKKMV
HEMIDEFGKD KYVVNLGHGI LPNIPVDHAK AFIDAVKEYG Q
|
|---|
| |