| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_0396 |
|---|
| Symbol | rplD |
|---|
| ID | 5093279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 406246 |
|---|
| End bp | 406875 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 644739790 |
|---|
| Product | 50S ribosomal protein L4 |
|---|
| Protein accession | YP_001192751 |
|---|
| Protein GI | 146298160 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0088] Ribosomal protein L4 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTAA AAGTATTAGA TTTCAACGGA AAAGATACTG GAAGAAAAGT TCAACTTTCT
GATTCAGTAT TCGCAATTGA ACCAAACAAT CACGCAGTAT ATCTTGATGT TAAGCAATAT
CTTGCTAATC AAAGACAAGG TACTCATAAA GCTAAAGAAA GAGCTGAAGT AACTGGAAGT
ACGCGTAAGA TTAAAAAACA AAAAGGTACG GGTACGGCTC GTGCGGGAAG TGTTAAGAAT
CCTTTGTTTA AAGGTGGAGG AACAGTTTTC GGGCCAAGAC CAAGAAGTTA TTCATTCAAA
TTGAATAAAA ACTTAAAAAG ATTGGCTAGA AAATCAGCTT TCTCTATCAA AGCAAAAGAG
TCGAATATTA TCGTTCTTGA AGACTTTAAT TTTGAAGCGC CAAACACTAA AAATTTCATT
AACGTTTTGA AAGCTTTAGG GTTAGAAAAT AAAAAATCTC TATTTGTGTT GGGTGAGTCA
AATAAAAATG TATATTTGTC GTCACGCAAT TTAAAGGCCT CTAATGTCGT AACTAGCTCA
GAATTAAGCA CTTACGCAAT ATTAAACACT AATAATTTAG TGCTTTTGGA GGGTTCTTTA
GAGTTAATTG AAGAAAATTT AAGTAAATAA
|
|---|
| Protein sequence | MEVKVLDFNG KDTGRKVQLS DSVFAIEPNN HAVYLDVKQY LANQRQGTHK AKERAEVTGS
TRKIKKQKGT GTARAGSVKN PLFKGGGTVF GPRPRSYSFK LNKNLKRLAR KSAFSIKAKE
SNIIVLEDFN FEAPNTKNFI NVLKALGLEN KKSLFVLGES NKNVYLSSRN LKASNVVTSS
ELSTYAILNT NNLVLLEGSL ELIEENLSK
|
|---|
| |