| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fjoh_0372 |
|---|
| Symbol | rpsD |
|---|
| ID | 5089573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Flavobacterium johnsoniae UW101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009441 |
|---|
| Strand | - |
|---|
| Start bp | 395427 |
|---|
| End bp | 396032 |
|---|
| Gene Length | 606 bp |
|---|
| Protein Length | 201 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 644739766 |
|---|
| Product | 30S ribosomal protein S4 |
|---|
| Protein accession | YP_001192727 |
|---|
| Protein GI | 146298136 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
|---|
| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAT ATACTGGTCC AAAAACCAAA ATCGCTCGTA AATTTGGCGA AGCAATCTTC
GGAGATGATA AGTCTTTCGA AAAAAGAAAT TACCCACCTG GACAACACGG GATGGCTAAG
AAAAGAGGAA AAAAATCTGA ATATGCTGTT CAATTAATGG AAAAGCAAAA AGCTAAATAT
TCTTATGGAA TTTTAGAAAA ACAATTCAGA AATTTATTCG AAAAAGCATC AGCTACTAAA
GGTGTAACTG GTGAAGTTTT ATTACAACTA TGTGAAGCAA GATTAGATAA TGTTGTTTTT
AGAATGGGAA TTGCTCCATC TAGAAGAGGT GCTCGTCAAA TTGTATCTCA CAGACACATT
ACTGTAAACG GAGAAGTTGT AAACATTCCT TCTTACCACC TAAAACCTGG TGATAAAGTT
GCAGTTCGTG AAAAATCTAA ATCTTTAGAA GCTATCGAGC GTTCTTTATC AAATTCAAGT
CATGTTTATG AATGGATTAC TTGGAACAAT GATCTTAAAG AAGGAACTTT TGTTTCTGTA
CCTGCGAGAC TTCAAATTCC AGAAAACATT AAAGAACAAT TAATCGTAGA GTTGTACAAC
AAATAA
|
|---|
| Protein sequence | MARYTGPKTK IARKFGEAIF GDDKSFEKRN YPPGQHGMAK KRGKKSEYAV QLMEKQKAKY
SYGILEKQFR NLFEKASATK GVTGEVLLQL CEARLDNVVF RMGIAPSRRG ARQIVSHRHI
TVNGEVVNIP SYHLKPGDKV AVREKSKSLE AIERSLSNSS HVYEWITWNN DLKEGTFVSV
PARLQIPENI KEQLIVELYN K
|
|---|
| |