Gene Fjoh_0160 details

Gene Information

• Locus tag: Fjoh_0160
• ID: 5094489
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Flavobacterium johnsoniae UW101
• Kingdom: Bacteria
• Replicon accession: NC_009441
• Strand: +
• Start bp: 165970
• End bp: 166485
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 36%
• IMG OID: 644739553
• Product: ECF subfamily RNA polymerase sigma-24 factor
• Protein accession: YP_001192517
• Protein GI: 146297926
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02985] RNA polymerase sigma-70 factor, Bacteroides expansion family 1

Plasmid Coverage information

• Num covering plasmid clones: 23
• Plasmid unclonability p-value: 0.329476
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAACTA AGAACCAATC AGATACTTGT GACGAAATAA TCTTTTCGTC CTTTTTTAAA 
AGCCATGCAA AAGCGCTTCG AAATTTTCTT CTTTACAAGT TTGGCAATAT CGAACAGGCA 
GAAGATATAA CACAGGAAGC ATTTGTAAAA CTTTGGCAGA ATTGTGCTTC GGTGCCGCTC 
GAAAAAGCAA AATCATATAT CTATACCATT GCAAACAACA GCAGTCTTAA CCAGATTGCG 
CACCAGAAAG TGGTTTTGAA ATACGAAAAA AACTTCACCG GTTTAGACAA AACCAATGAA 
AGCCCGGAAT ATATTCTGGA AGAAAAACAG TTTCAGGCAA AACTTTTAAA AGCCATCGAA 
AACTTAAACG AAAAACAACG CACCGCTTTT TTGATGCACC GAATTGACGG AAAAAAATAC 
AGTGAAATTG CTGCGGAGTT AAATATTAGC GTAAAGGCGG TAGAAAAACG CATTCATCTT 
GCGTTGTTAA GCTTACGTAA AGAAATTGAT TTATAA 

 

Protein sequence

MPTKNQSDTC DEIIFSSFFK SHAKALRNFL LYKFGNIEQA EDITQEAFVK LWQNCASVPL 
EKAKSYIYTI ANNSSLNQIA HQKVVLKYEK NFTGLDKTNE SPEYILEEKQ FQAKLLKAIE 
NLNEKQRTAF LMHRIDGKKY SEIAAELNIS VKAVEKRIHL ALLSLRKEID L