| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2279 |
|---|
| Symbol | |
|---|
| ID | 5104231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 2178924 |
|---|
| End bp | 2179454 |
|---|
| Gene Length | 531 bp |
|---|
| Protein Length | 176 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640508176 |
|---|
| Product | transcription factor IIE (TFIIE), alpha subunit |
|---|
| Protein accession | YP_001192341 |
|---|
| Protein GI | 146305025 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1675] Transcription initiation factor IIE, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00373] conserved hypothetical protein TIGR00373 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.933385 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGGCA ACATTGATCA ACTCATGAAA GATATGGCTA GGGATCTCCT GGGAGAGGAC
GTAATAGATG TGCTCTCTTT CCTTCTTGAT AATAAGACAG AGCTAACTGA CGAGGAGATG
GCCAACAAAC TCAACGTCAA GGTTAACGAG GTCAGGAAGA AGTTATATGC CCTTGCTGAA
CACGGGCTGG TGAGCTACCG GAGAACCAGG GATAAGGAGA CTGGTTGGTA TGTATATTAC
TGGAAGGCCA ATGTGGATCA GATAAATGAA CTTCTCCTCT CACGTAAGAG GGAGATCCTG
AACAAACTTA AGGCTAGATT GGAGTACGAA ACTAACAACG AGTTCTATAT TTGTCCCGAG
GATAAGACCA AGTACACCTT TGAGGAGGCC TTTGAGAATG AGTTCAAATG TCCCAAATGC
GGTGTTCAAC TGGTCTATTA CGATTCCGCC AAAATGCGGG AATTCCTAGA ACGTAAAATA
AAGGAAATAG AAGAGGAGAT CGCCAGGGAG ACAAAGGTTG GGAGCTCCTA A
|
|---|
| Protein sequence | MTGNIDQLMK DMARDLLGED VIDVLSFLLD NKTELTDEEM ANKLNVKVNE VRKKLYALAE
HGLVSYRRTR DKETGWYVYY WKANVDQINE LLLSRKREIL NKLKARLEYE TNNEFYICPE
DKTKYTFEEA FENEFKCPKC GVQLVYYDSA KMREFLERKI KEIEEEIARE TKVGSS
|
|---|
| |