| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2254 |
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| Symbol | |
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| ID | 5104207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 2154562 |
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| End bp | 2156490 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640508150 |
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| Product | beta-lactamase domain-containing protein |
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| Protein accession | YP_001192316 |
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| Protein GI | 146305000 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1782] Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain |
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| TIGRFAM ID | [TIGR03675] arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.311245 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCAATT TTAGGTTAGG TATAATATCG TCCATATACA ATGGAATTCC AAAGGAGGCT
CAAATCACAA GAATTGAGTT CGAGGGTCCA GAAATCGCAG TGTATGTTAA GAATCCGTCA
GTTCTTAGCG ATAAAATGGA CCTAATAAAG AAGATAGTAA AGGAAATAAA GAAAAGGATT
GTAATCAAAG CTGATAACAG TGTCAGAAAG GATAAAAAGG AGACGATAGA AATAATAAAG
AATTTTGTTC CAGCAGAAGC TCAAATTTCT GATATAAAGT TTGACGATGA ACTAGGAGAG
GTTCTCATAA AGGCAAAGAA GCCTGGACTG GTAATAGGTA AAAGAGGTCT AATCCAACAG
AAGATTTTCA TGGATACTTA CTGGAGGCCT GTAATCATAA GAGAACCACC CATCAAGTCC
AGAACCGTAG AGGGAGTTCT CACCCACATA TACAACGAAA CTGAGTATAG GGCGAAGATG
CTCAAGACCT TTGGAGAGAG GATACACAGG GAGATACTAT TTAAGGACAG ATACGTGAGG
GTAACTGCCC TGGGAGCCTT CCAAGAGGTT GGGAGATCAG CAGTTCTGGT GGAGACCCCT
GAAAGCAGGG TGTTGATGGA CGTGGGAGTG AATCCGAGCG TGAACTTTGG AGAAAGGATG
TTTCCGAAGC TGGATATTGA CCAGTTGAGA TTGGAGGACC TGGACGCTGT GGTATTGACC
CATGCCCACC TGGATCACAG CGGAATGATC CCATTTCTTT TCAAGTACGG ATATGACGGT
CCGGTGTACA CAACTCAGCC CACTAGAGAC ATAATGGCCT TAATGCAGTT GGATCTACTT
GACGTGGCAG ATAAGGAAGG AAGACCTCTG CCATATTCCG CTAAGGAAGT TAGAAAGGAG
TTACTCCATA CCATTACCCT AGATTACGAG GAAGTTACGG ATATAGCTCC GGATATAAGG
CTCACCTTCT ATAATGCAGG GCATATCATC GGTTCAGCAA TGGCCCATCT TCACATAGGA
GATGGTGTGC ACAACCTTGT CTACACTGGA GATTTCAAAT ACGCTAGAAC GAGATTGTTG
GACAGAGCCG TTTCCGAGTT CCCTAGGGTG GATACCCTAA TAATGGAGAC CACCTATGGT
GCACAGTTGC AGACCAATAG GGATGAATCG GAGAAGCAGT TGATTGATGT AATAAACAAG
ACCCTAAATA GGGGTGGCAA GGTTCTCATA CCTGTGTTAG CTGTGGGGAG AGGACAGGAA
ATCATGTTGG TGATAAATGA CGCAATGAAG AGAAAACTCA TACCAGAAGT TCCAGTTTAT
GTTACAGGGC TCTTCGACGA GGTTACAGCA ATACACACCG CATATCCTGA GTGGCTAGGC
AAAGAAGTGA GAGATTCAAT CTTGTTCAGG GATGAGAACC CGTTCACTTC TGAGTTCTTC
AAGAGAATAG AAGGATACAG GGAGGATATC GCAGAGGGTG AGCCCAGTAT AATTCTTGCA
ACTTCCGGTA TGTTGAACGG TGGACCGGCA GTTGAGTTCT TTAAACAGTT AGCTCCCGAT
CCAAAGAACA GTTTAATTTT CGTTAGTTAT CAGGCTGAGG GAACCCTGGG TAGAAAGGTT
AGAGACGGGG CTAGGGAGAT ACAGATTATA GGAAGGGACG GAAGAGTAGA TAACATAAAG
GTTAATCTAG AGACTACACC CATAGACGGA TTTTCAGGAC ATTCAGACAG GAGACAACTA
CTGAAATTCC TAGAGGATTT AACGCCCAAA CCCAGGAATA TTATATTAAA TCATGGAGAG
GCTTCAGCTA TTAGAGAATT CAAGAAAAAC ATAGAAAACT TTAGAGAAAG GGAGAGACTT
GGCTTGAGAT CAGCGAATAT CTATTCCCCA GCAATTCTTG ATAGCATCAG GTTGGACAAG
ACTTCCTAG
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| Protein sequence | MSNFRLGIIS SIYNGIPKEA QITRIEFEGP EIAVYVKNPS VLSDKMDLIK KIVKEIKKRI
VIKADNSVRK DKKETIEIIK NFVPAEAQIS DIKFDDELGE VLIKAKKPGL VIGKRGLIQQ
KIFMDTYWRP VIIREPPIKS RTVEGVLTHI YNETEYRAKM LKTFGERIHR EILFKDRYVR
VTALGAFQEV GRSAVLVETP ESRVLMDVGV NPSVNFGERM FPKLDIDQLR LEDLDAVVLT
HAHLDHSGMI PFLFKYGYDG PVYTTQPTRD IMALMQLDLL DVADKEGRPL PYSAKEVRKE
LLHTITLDYE EVTDIAPDIR LTFYNAGHII GSAMAHLHIG DGVHNLVYTG DFKYARTRLL
DRAVSEFPRV DTLIMETTYG AQLQTNRDES EKQLIDVINK TLNRGGKVLI PVLAVGRGQE
IMLVINDAMK RKLIPEVPVY VTGLFDEVTA IHTAYPEWLG KEVRDSILFR DENPFTSEFF
KRIEGYREDI AEGEPSIILA TSGMLNGGPA VEFFKQLAPD PKNSLIFVSY QAEGTLGRKV
RDGAREIQII GRDGRVDNIK VNLETTPIDG FSGHSDRRQL LKFLEDLTPK PRNIILNHGE
ASAIREFKKN IENFRERERL GLRSANIYSP AILDSIRLDK TS
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