Gene Msed_2246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_2246 
Symbol 
ID5104307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp2148759 
End bp2149205 
Gene Length447 bp 
Protein Length148 aa 
Translation table11 
GC content43% 
IMG OID640508139 
Productribonuclease H 
Protein accessionYP_001192308 
Protein GI146304992 
COG category[L] Replication, recombination and repair 
COG ID[COG0328] Ribonuclease HI 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.454266 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00558183 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAAAGCCC TTGGCAGATT TGACGGTTTA TGCGAACCAA AAAATCCAGG TGGAATAGCC 
ACATTCGGCT ATGTCATCTA CATTAACGGG AACGTAATAG AGGGAATGGG ACTAGCCTCT
GAACCTTGGA GCGTGAACTC CACTAATAAC GTTGCTGAGT ACACCGGTTT GATATGCTTG
TTAAAAAAGA TGCTGACGCT AGGTGTCACA GAGGCTAGGG TAGAAGGGGA TAGTCAATTA
GTGATAAGGC AACTCAAAGG GGAATACTCT GTGAAATCAA AGAGAATTAT CCCCCTCTAC
GAGAAGGCTA AGGAGCTTCT TGCAAAATTC TCGTCAGTTG AGATTGAGTG GATACCCAGA
GAAGAAAACA AGGAGGCAGA TAGAATCACT AGGATAGCTT TCAAAAAGGT GTTAAACGGG
GAATTAAAGA AAATAGGATG TGATTAG
 
Protein sequence
MKALGRFDGL CEPKNPGGIA TFGYVIYING NVIEGMGLAS EPWSVNSTNN VAEYTGLICL 
LKKMLTLGVT EARVEGDSQL VIRQLKGEYS VKSKRIIPLY EKAKELLAKF SSVEIEWIPR
EENKEADRIT RIAFKKVLNG ELKKIGCD