Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_2246 |
Symbol | |
ID | 5104307 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | + |
Start bp | 2148759 |
End bp | 2149205 |
Gene Length | 447 bp |
Protein Length | 148 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640508139 |
Product | ribonuclease H |
Protein accession | YP_001192308 |
Protein GI | 146304992 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0328] Ribonuclease HI |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.454266 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00558183 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGAAAGCCC TTGGCAGATT TGACGGTTTA TGCGAACCAA AAAATCCAGG TGGAATAGCC ACATTCGGCT ATGTCATCTA CATTAACGGG AACGTAATAG AGGGAATGGG ACTAGCCTCT GAACCTTGGA GCGTGAACTC CACTAATAAC GTTGCTGAGT ACACCGGTTT GATATGCTTG TTAAAAAAGA TGCTGACGCT AGGTGTCACA GAGGCTAGGG TAGAAGGGGA TAGTCAATTA GTGATAAGGC AACTCAAAGG GGAATACTCT GTGAAATCAA AGAGAATTAT CCCCCTCTAC GAGAAGGCTA AGGAGCTTCT TGCAAAATTC TCGTCAGTTG AGATTGAGTG GATACCCAGA GAAGAAAACA AGGAGGCAGA TAGAATCACT AGGATAGCTT TCAAAAAGGT GTTAAACGGG GAATTAAAGA AAATAGGATG TGATTAG
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Protein sequence | MKALGRFDGL CEPKNPGGIA TFGYVIYING NVIEGMGLAS EPWSVNSTNN VAEYTGLICL LKKMLTLGVT EARVEGDSQL VIRQLKGEYS VKSKRIIPLY EKAKELLAKF SSVEIEWIPR EENKEADRIT RIAFKKVLNG ELKKIGCD
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