Gene Msed_2245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_2245 
Symbol 
ID5104306 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp2148350 
End bp2148781 
Gene Length432 bp 
Protein Length143 aa 
Translation table11 
GC content40% 
IMG OID640508138 
Productsirohydrochlorin cobaltochelatase 
Protein accessionYP_001192307 
Protein GI146304991 
COG category[S] Function unknown 
COG ID[COG2138] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.177211 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00554027 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACACGAG TATATAAACT CAGGGTTATG GTTATAGATA TGAAAATAGG AATTCTGCTT 
GTGCTTCATG GAAGTAGAGT AAATGAGTGG AAAGAGGTGG CAATAAATTA CAAGGACCTT
CTCAAGAACT ATTTTGAATT AGTAGAGTTT GGATTTATAG AATTTAATCA ACCTACTCTC
AGAGAGGCCG TTGAAGCCTT GGTTAAAATG GGAGCTACGG AAATAGTAGC GGTTCCACTT
TTATTCGCAG CTGGAGCCCA TTTCTATAGG GACATTCCCA GACTAATTGG CATCGACGAA
AACGGAAACG TGACGGTGAA TGAGAAAAGC GTGAAAGTAA TAATTGCTAG GCCCATAGGC
ATTGATAAAA GGGTTGCTGA AGTACTAAAG GAAAGGGTAG AACAGGCTCT TGAAAGCCCT
TGGCAGATTT GA
 
Protein sequence
MTRVYKLRVM VIDMKIGILL VLHGSRVNEW KEVAINYKDL LKNYFELVEF GFIEFNQPTL 
REAVEALVKM GATEIVAVPL LFAAGAHFYR DIPRLIGIDE NGNVTVNEKS VKVIIARPIG
IDKRVAEVLK ERVEQALESP WQI