| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2237 |
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| Symbol | |
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| ID | 5104298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 2141223 |
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| End bp | 2143505 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640508130 |
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| Product | AAA family ATPase, CDC48 subfamily protein |
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| Protein accession | YP_001192299 |
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| Protein GI | 146304983 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0464] ATPases of the AAA+ class |
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| TIGRFAM ID | [TIGR01243] AAA family ATPase, CDC48 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.714919 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00116509 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTTATAC TAGATTCAGA TATGTCGTCG AATCTGAGAT TGAGAATATT GGAGGCGAGA
CAGAAGGACG TGGGTCGTAA GATAGCGCGA ATGACGGAGC ATACTATGAG AAGACTAGGA
ATTGAAACAG GGGACTACAT TGAGCTTACA GGGCCTAGTG GCACCGCCCT GTTGCAGGCG
ATGCCGGCTT ATGATATAAG CGACGGTGAA ATAAGAGTAG ACGGTTACGT TAGAAAGACC
ATAGGAGTTT CCATTGGAGA CGAAGTGACA GTAAAGAAGG CTAAGGTGGA TCCAGCCACA
AAAGTTACTC TTGCTCCAAC ACAGCCTATT CGGTTTGATC AGACATTTGT AGATTATGTA
AAGGAATACT TAATGTATAA GCCCCTTATC AAGGGAGAGA CAATCTCAAT TCCCATCTAC
ACCGGTACAA TAGATCTAGT CGTATCCAAC ACACAACCCA GCAACTATGT CTTTGTTACT
AATAGTACAG AGATTACGAT AAAGGAGGAA CCAGTTAGGG AAGCCCAGGT GTATCCGAGA
GTAACATGGG AGGACATTGG AGACCTAGAC GAGGTTAAGG AGAAGTTAAG GGAGATGATA
GAGCTTCCTA TGAAACACCC AGAGTTATTT CAACACCTAG GCATAGAACC ACCTAAGGGT
GTGCTACTTT ATGGACCTCC TGGAGTTGGG AAAACCTTAC TTGCTAGAGC CTTGGCCAAC
GAGATAGGCG CTTACTTTGT CACTATTAAC GGACCGGAAA TAATGAGTAA ATTCTATGGT
GAAAGTGAGC AGAGACTTAG GGAGATCTTT GATGACGCCG ACAAAAATGC ACCTTCAATA
ATCTTCATCG ACGAAATAGA CGCCATTGCC CCGAAGAGAG AAGAGGTTAC TGGAGAAGTT
GAGAAGAGGG TGGTCTCACA ATTACTAACG CTCATGGACG GAATAAAGGG ACGCGGGAGA
ATTGTGGTCA TAGGGGCTAC AAATAGGCCA GATGCTGTGG ATCAAGCGCT TAGAAGACCT
GGTAGATTTG ATAGGGAAAT AGAGATTAGG CCCCCAGACA CTAAGGCTAG AAAGGAAATA
CTTCAGGTTC ACACCAGGAA TATGCCCTTA GCTGATGACG TAAACTTGGA CGTAATTGCA
GAGATGACCA ACGGTTACAC GGGAGCGGAT ATAGCAGCGT TAGCCAAGGA GGCTGCCATG
CATGCCCTGA GGAGATTCAT CAACACGGGA GACAGAAAGA AACTACTGGA GCAAGAAAGG
CTGTCCCCTG AAGTTCTTAA GGAACTCAAA GTCACCATGG ACGACTTCAT GAATGCCATG
AAATTTGTTC AGCCCACCTT ACTTAGGGAA GTATATGTGG AAGTACCAAG GGTTAGATGG
TCAGAGATTG GTGGGTTGGA GAACGTAAAA CAGCAATTAC GAGAAGCAAT AGAGTGGCCC
ATGAGATTTC CAGAGGTTTT CAATAAAGCT GGGATAAGGC CACCCAAGGG TGTACTCCTG
TTTGGCCCCC CTGGAACTGG AAAAACCATG CTTGCCAAGG CTGTTGCAAC GGAGAGTGGT
GCAAACTTCA TCGCAGTTAG AGGACCAGAG GTTTTATCCA AGTGGGTTGG GGAGAGCGAG
AAGGCCATTA GGGAGATCTT CAAGAGGGCC AGACAGACTG CACCCACTGT GGTGTTCTTT
GACGAGATTG ATTCAATAGC ACCCATGAGA GGAATGGGAC ATGATAGCGG TGTTACCGAG
AGAATGGTTA ATCAATTGCT CTCTGAAATG GATGGAATAG TGCCCCTGAG TAAGGTAGTG
GTGATTGCGG CAACCAATAG ACCCGATATA ATAGATCCTG CATTGCTTAG ACCTGGAAGA
TTTGATAGGC TAATTTACGT TCCTCCACCA GACAAGCAGG CTAGATTAGA GATCCTGAAG
GTACACACTA AATCCGTGCC CCTTAGTCCA GATGTTAATC TCGAGGCCCT AGCTGAGAAA
ACCGAGGGCT ACACTGGGGC TGATCTAGAG GCGCTTGTTA GAGAGGCTAC AATGATATCT
TTAAGGGAGA TTTACTCTAA GTGTAACACC TCCGCGGAGA AGGAATGCAA GAATGCTAAG
GGAGATGGAG CTACCGAGTG CTACAATAGA GTAATTAAAT CCTGCATTGA TTCCAATGCT
CCCAATGTAA CCTCAGCTCA TTTTGAGGAG GCCATGAAAG TTGTGACGCC CAGCTTGACT
AAGGCCCAGA TTGAGAGATA TGAAAGAATG GCTAAGGAAC TGAAGAGGAG TGCCCTAGGA
TGA
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| Protein sequence | MVILDSDMSS NLRLRILEAR QKDVGRKIAR MTEHTMRRLG IETGDYIELT GPSGTALLQA
MPAYDISDGE IRVDGYVRKT IGVSIGDEVT VKKAKVDPAT KVTLAPTQPI RFDQTFVDYV
KEYLMYKPLI KGETISIPIY TGTIDLVVSN TQPSNYVFVT NSTEITIKEE PVREAQVYPR
VTWEDIGDLD EVKEKLREMI ELPMKHPELF QHLGIEPPKG VLLYGPPGVG KTLLARALAN
EIGAYFVTIN GPEIMSKFYG ESEQRLREIF DDADKNAPSI IFIDEIDAIA PKREEVTGEV
EKRVVSQLLT LMDGIKGRGR IVVIGATNRP DAVDQALRRP GRFDREIEIR PPDTKARKEI
LQVHTRNMPL ADDVNLDVIA EMTNGYTGAD IAALAKEAAM HALRRFINTG DRKKLLEQER
LSPEVLKELK VTMDDFMNAM KFVQPTLLRE VYVEVPRVRW SEIGGLENVK QQLREAIEWP
MRFPEVFNKA GIRPPKGVLL FGPPGTGKTM LAKAVATESG ANFIAVRGPE VLSKWVGESE
KAIREIFKRA RQTAPTVVFF DEIDSIAPMR GMGHDSGVTE RMVNQLLSEM DGIVPLSKVV
VIAATNRPDI IDPALLRPGR FDRLIYVPPP DKQARLEILK VHTKSVPLSP DVNLEALAEK
TEGYTGADLE ALVREATMIS LREIYSKCNT SAEKECKNAK GDGATECYNR VIKSCIDSNA
PNVTSAHFEE AMKVVTPSLT KAQIERYERM AKELKRSALG
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