| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2219 |
|---|
| Symbol | |
|---|
| ID | 5104280 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 2127454 |
|---|
| End bp | 2128062 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640508112 |
|---|
| Product | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase |
|---|
| Protein accession | YP_001192281 |
|---|
| Protein GI | 146304965 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0163] 3-polyprenyl-4-hydroxybenzoate decarboxylase |
|---|
| TIGRFAM ID | [TIGR00421] polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000349211 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATGAGA GATTGGCTAA GGAAACAGGA GCAGACAAGG CAAAAAGGAA AGTTGTAGTT
GGTGTCACGG GTGCAAGCGG GGTCATCTAC GGAATATCAA TGATTAAAAT CCTCGTTTCC
TTGGGACTTG AACCTGTTGT TATAGTTAGT AAGGGCGCTC TGAAGGTAGC TAAAGCGGAG
CAAGGAATAG ATCTGATCGG TGCGGTAAGG GACATAGCCA AGGAAGTTTA CCTCGAAAAC
GAGATGGATG CTCCTCCATC AAGTTCTAGT GCGTTAGTGA AGACTCTGGG AATGGCTATT
ATACCTTGTA GTATCAGAAC ATTGGCACAG ATTGCTGCGG GGATATCCTC AAACTTGGTC
TCCAGAACTG CCATAAACAT GCTTAGACTC AAGAAAAGGC TAGTTTTGGT CGTGAGAGAG
ACGCCGCTTG GAACCATAGA ATTAGAAAAT GCTCTCAAAG TCTCTGTTGC TGGTGGCATA
ATTCTACCTG CATCTCCAGG ATTTTACACA AAACCTAAGA CCATAGAGGA CATGATAAAC
TTCGTAGTGG GAAAAACCTT AGATGCCTTG GAGATAGAGC ATGATATTTA CAGGCGATGG
ACTAGATAA
|
|---|
| Protein sequence | MDERLAKETG ADKAKRKVVV GVTGASGVIY GISMIKILVS LGLEPVVIVS KGALKVAKAE
QGIDLIGAVR DIAKEVYLEN EMDAPPSSSS ALVKTLGMAI IPCSIRTLAQ IAAGISSNLV
SRTAINMLRL KKRLVLVVRE TPLGTIELEN ALKVSVAGGI ILPASPGFYT KPKTIEDMIN
FVVGKTLDAL EIEHDIYRRW TR
|
|---|
| |