| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2217 |
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| Symbol | |
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| ID | 5104278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | + |
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| Start bp | 2126462 |
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| End bp | 2127010 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 640508110 |
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| Product | tRNA-splicing endonuclease subunit alpha |
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| Protein accession | YP_001192279 |
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| Protein GI | 146304963 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1676] tRNA splicing endonuclease |
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| TIGRFAM ID | [TIGR00324] tRNA intron endonuclease |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.00000332759 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAAAATTT CTGGAGAGTT GTTGGGAGAT AAAATAGTAA TTTTCAACTT AGATGAGGCA
AGAACCCTTT ACCAGATGGG TTTCTATGGG AAACCATTAA CCATTTCCAA ACCTAAGTCT
GCCAAGGATA TAAACAAACC ACTGGAACTT TCATTGATTG AGGGCTTATA CTTATCTGAG
CAGGGGATTC TAGAGGTTAG ACACTTAGGT GAAGTTCTAG ATATAGCGCG ACTGGAGAAT
TACGCTACCT CTGTTGTAGC TAAGTTCAAA CCCATTTATC TGGTTTACAA GGATCTGAAG
AGAAGAGGTT TCATAGTCAG ATCTGGCATA AAGTTTGGTT CAGATTTCGC AATTTACACC
TTAGGACCTG GAGTGGAACA TGCACCATTT GTAGTATCTG TAATAGACTC GTCTGAGAGA
CTTTCTGTAA ACGAACTGAT GAGTTATGGA AGAGTTTCAC ACAGCACGAG GAAAAAATTG
GTGTTAGCTA TTGTCAACAC TCAACTAAAT GAGATCAAGT ACATAATGTT TAAATGGGTG
AAGCTATGA
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| Protein sequence | MKISGELLGD KIVIFNLDEA RTLYQMGFYG KPLTISKPKS AKDINKPLEL SLIEGLYLSE
QGILEVRHLG EVLDIARLEN YATSVVAKFK PIYLVYKDLK RRGFIVRSGI KFGSDFAIYT
LGPGVEHAPF VVSVIDSSER LSVNELMSYG RVSHSTRKKL VLAIVNTQLN EIKYIMFKWV
KL
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