Gene Msed_2210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_2210 
Symbol 
ID5105430 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp2121879 
End bp2122178 
Gene Length300 bp 
Protein Length99 aa 
Translation table11 
GC content40% 
IMG OID640508103 
Producttranslation initiation factor Sui1 
Protein accessionYP_001192272 
Protein GI146304956 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0023] Translation initiation factor 1 (eIF-1/SUI1) and related proteins 
TIGRFAM ID[TIGR01158] translation initation factor SUI1, putative, prokaryotic 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000269686 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGCAGACA ATTTGTGTGG AGGACTTCCA CCGGAAGTAT GTGAGCAGTT AAATAAAGAA 
GAACAGTTTA TTAAGATAAA ACTGGAAAAG AGAAGGTATG GAAAAGAGGT AACTGTTATA
GAGGGTTTAG GGGACGATGC TGATCTGAAG AAAATCGCTT CTGAACTTAA GTCTAAACTG
GCTGCAGGAG GTACTGTCAA AAATGGACGC ATAGAGATAC AAGGAGATCA TAGGGAAAGG
GCGAGAGATC TTCTGGTAAA GTTAGGTTTC CCAGAGTCTA ACATAATGGT AATAGAATAA
 
Protein sequence
MADNLCGGLP PEVCEQLNKE EQFIKIKLEK RRYGKEVTVI EGLGDDADLK KIASELKSKL 
AAGGTVKNGR IEIQGDHRER ARDLLVKLGF PESNIMVIE