| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2170 |
|---|
| Symbol | |
|---|
| ID | 5104909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 2087534 |
|---|
| End bp | 2088085 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 640508063 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_001192233 |
|---|
| Protein GI | 146304917 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000411867 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGATAAAAC CAACCATAGT CCTAATGGTA CTAATTCTCG TGGGATTTCT TGTGGGGATT
ATCACATATA GTGTTAGCCC GTATCTTTTT TCGTTCCTAA TTCAGGTGAA CTACCTAGTG
TTAAGGGGAG ATTACCTCTC TCTGATAACC TCAATCTTTG TAACCAATAG TTTCACTGAC
TTTATTTTCA ATTTTTTCTC TATGGGTGTA ATATACTACC TCTTTGGATC TAAGGCGGGT
AAGCTTGAAT ACGTAGTCTT CTTGCTCTCT GGACTGGTAG GAAATATACT AACTCTCATT
TTCTTTCCTC CTTACGTGGC CTCGGCTGGG GCCTCAGGAG GTATATTCGG TGTACTAGCG
TATTATATTT TGGATGACAT GCTAGAGTTC AATAGGTTTG ACTGGAACGG TCTAGCTTTG
CTTATAATCG TTTTTGTTCT CAGTGACATA ATACCAGGCG TTAACTACGT AGCTCACATT
GGAGGTATAG TAGGTGGGGT AATTCTAGCT GTCGGGAGAA AGAAGCTTTT AGGAGATACA
CAAGGAAAAT GA
|
|---|
| Protein sequence | MIKPTIVLMV LILVGFLVGI ITYSVSPYLF SFLIQVNYLV LRGDYLSLIT SIFVTNSFTD
FIFNFFSMGV IYYLFGSKAG KLEYVVFLLS GLVGNILTLI FFPPYVASAG ASGGIFGVLA
YYILDDMLEF NRFDWNGLAL LIIVFVLSDI IPGVNYVAHI GGIVGGVILA VGRKKLLGDT
QGK
|
|---|
| |