Gene Msed_2145 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_2145 
Symbol 
ID5104884 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp2061782 
End bp2062570 
Gene Length789 bp 
Protein Length262 aa 
Translation table11 
GC content45% 
IMG OID640508036 
ProductDNA-directed RNA polymerase, subunit D 
Protein accessionYP_001192208 
Protein GI146304892 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000343639 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000345758 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCCTATTC AGGTCCTAAA GAAGGAGAAC TATTTTCTTT CAATCTTAAC CAAGGATTAC 
CCTCTGGAGT TCGTTAATTC CATCAGGAGG GCTTCAATGC TCTACGTCCC AGTAATGGCT
GTGGACGAGG TTTACGTGAT CGAGAACAAT AGCCCACTTT ATGACGAGAT GTTGGCCCAC
AGACTTGGTT TAATTCCCTT TGATAGTAAG GACGCGCTTG ATTACTATAG GAGGCCAGAG
GAGTGCATAG AATGCACAGA GAACTGCGAT AGATGTTTCA CCAAGGCGTA TATAGACGTT
AAGGCAGAGG ATTCACAGGT AATGGTATAC TCTAGGGACA TAAGGACAGA GGATCCCAAC
GTTACCCCCA TCAGTAAGGA CATTCCCATA GTTCTTCTTG GTAAGAATCA GAAGGTCACA
CTGGAAATGA AAATGAGATT AGGTTACGGT AAGGAGCATG CTAAGTTCAA TCCAGTATCT
CTCGCAATTC TGAGGTACAA ACCCAAGGTT GAGGTAAATA AGGATTGCGA GAAGGCAGTT
GAGGTATGCC CAGAGAGGGT ATTTTCCTTT GAGAACGGCA AGTTAAAGGT AGTGAATGAG
ATGGCCTGCA CTCTATGTGA GGAGTGCGTG AAGGCCTGTG AGGGGATAAA CGTGAGCCCA
GAACCGAATC AGTACATCCT TGAAATAGAG TCTGTTGGCT CTTTGGAGCC TAGGAGAATT
TTAATAGAGG CAACAAAGAG TATACTGAGC AAGATCGAGG AGTTGAAGAA GAAGGTGGAG
GGATTATGA
 
Protein sequence
MPIQVLKKEN YFLSILTKDY PLEFVNSIRR ASMLYVPVMA VDEVYVIENN SPLYDEMLAH 
RLGLIPFDSK DALDYYRRPE ECIECTENCD RCFTKAYIDV KAEDSQVMVY SRDIRTEDPN
VTPISKDIPI VLLGKNQKVT LEMKMRLGYG KEHAKFNPVS LAILRYKPKV EVNKDCEKAV
EVCPERVFSF ENGKLKVVNE MACTLCEECV KACEGINVSP EPNQYILEIE SVGSLEPRRI
LIEATKSILS KIEELKKKVE GL