Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Msed_2145 |
Symbol | |
ID | 5104884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Metallosphaera sedula DSM 5348 |
Kingdom | Archaea |
Replicon accession | NC_009440 |
Strand | - |
Start bp | 2061782 |
End bp | 2062570 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640508036 |
Product | DNA-directed RNA polymerase, subunit D |
Protein accession | YP_001192208 |
Protein GI | 146304892 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000000343639 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000345758 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGCCTATTC AGGTCCTAAA GAAGGAGAAC TATTTTCTTT CAATCTTAAC CAAGGATTAC CCTCTGGAGT TCGTTAATTC CATCAGGAGG GCTTCAATGC TCTACGTCCC AGTAATGGCT GTGGACGAGG TTTACGTGAT CGAGAACAAT AGCCCACTTT ATGACGAGAT GTTGGCCCAC AGACTTGGTT TAATTCCCTT TGATAGTAAG GACGCGCTTG ATTACTATAG GAGGCCAGAG GAGTGCATAG AATGCACAGA GAACTGCGAT AGATGTTTCA CCAAGGCGTA TATAGACGTT AAGGCAGAGG ATTCACAGGT AATGGTATAC TCTAGGGACA TAAGGACAGA GGATCCCAAC GTTACCCCCA TCAGTAAGGA CATTCCCATA GTTCTTCTTG GTAAGAATCA GAAGGTCACA CTGGAAATGA AAATGAGATT AGGTTACGGT AAGGAGCATG CTAAGTTCAA TCCAGTATCT CTCGCAATTC TGAGGTACAA ACCCAAGGTT GAGGTAAATA AGGATTGCGA GAAGGCAGTT GAGGTATGCC CAGAGAGGGT ATTTTCCTTT GAGAACGGCA AGTTAAAGGT AGTGAATGAG ATGGCCTGCA CTCTATGTGA GGAGTGCGTG AAGGCCTGTG AGGGGATAAA CGTGAGCCCA GAACCGAATC AGTACATCCT TGAAATAGAG TCTGTTGGCT CTTTGGAGCC TAGGAGAATT TTAATAGAGG CAACAAAGAG TATACTGAGC AAGATCGAGG AGTTGAAGAA GAAGGTGGAG GGATTATGA
|
Protein sequence | MPIQVLKKEN YFLSILTKDY PLEFVNSIRR ASMLYVPVMA VDEVYVIENN SPLYDEMLAH RLGLIPFDSK DALDYYRRPE ECIECTENCD RCFTKAYIDV KAEDSQVMVY SRDIRTEDPN VTPISKDIPI VLLGKNQKVT LEMKMRLGYG KEHAKFNPVS LAILRYKPKV EVNKDCEKAV EVCPERVFSF ENGKLKVVNE MACTLCEECV KACEGINVSP EPNQYILEIE SVGSLEPRRI LIEATKSILS KIEELKKKVE GL
|
| |