| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2087 |
|---|
| Symbol | |
|---|
| ID | 5105067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 2005941 |
|---|
| End bp | 2007077 |
|---|
| Gene Length | 1137 bp |
|---|
| Protein Length | 378 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640507977 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001192151 |
|---|
| Protein GI | 146304835 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCGAGT TAACAAAGGA ACAACTTGAG TACAAGGAGA AAGTGAGGGA CTACGCCCAG
AAAGTTGTTA GGGAGTACGC CAAGGCTATG GATGAAAAGA ACGAAGGAGG AGAGAAGATA
GTAAAGGACT TTGGAGAAAT GGGACTTCTA GGAATGAAGA TTCCACCCCA ATATGGTGGC
CTGGGGCTAG GTGAGGTAGC CTTCGCCATT GCCACGGAGG AACTGGGTGC GGAGAGTGGC
GGAGCGTCAC ACAGCCTTCA TACCCAGCTG AATGCCCTTC AGCTTCTAGT CTCAGTTGGA
GGGGACTCAG CCAAGACGTG GATAGAGGAA GGGGTTAAGG GAAAGGAAAT TTACGCTGTA
GCACTTACAG AGCCTGGCGC TGGATCTGAT CTTGGTGCGC TTCAGACGAC AGCGAAGTTA
GAAGGAAACG AGCTAGTCAT TAATGGGGAG AAAATCTTCA CGAGTGGGGC ATCGTTTTCC
ACGAAGATGG TAGTTCTGGC AAGGACAAGC GGTAATCCGG GAGATAGGCA GGGCATCTCA
ATGCTACTTG TGGACACAAA GACCCCTGGG ATAGAGGTTC ACAAACTAGA CCTTATGGGG
ATCAGGGGAG CTGGAGTGTC CTACGTGAAG TTTAACAACG CTAGGGTTCC AAAGGACTCA
ATTATAGGCA AGGAAGGAGA CGCCTTCAGG GGGGCAATAA AGGCATTGAT GGTAAGCAGA
AACGGTTATG CCGGTATAGC TGTGGGTATA GCCAGGGGGG CTTTAGAAGA TGCAGTTAAC
AGGGCTGCAT CGAGAAAACA ATTTGGAAAA TCTCTCCTTG AACAGGAGTG GATATCCTTT
AACCTAGCAG ATGCACTAGT AAAGGTTGAG GCATCAAGGC TACTGACCAT GAGGGCAGCC
TACATGCTCG ACAAGGGAAT AGAGGCGTTA ACTGAGGCCA GTATGGCCAA GTATATGGCT
GCTATAACCG CAGCTGAAGT TAGTAGGACT GCCTTACATA TATTTGGAGG ACATGGGCTA
AACAGAGGCT CGAAGGTTGA GAGGCTATAT AGGGACGCTA AGATTATGGA GATTGCAGAA
GGAACAAATG AGATGCAGCT TATAGCGGTA TCCAGGGCCC TACAGCCTAA GAAATAG
|
|---|
| Protein sequence | MFELTKEQLE YKEKVRDYAQ KVVREYAKAM DEKNEGGEKI VKDFGEMGLL GMKIPPQYGG
LGLGEVAFAI ATEELGAESG GASHSLHTQL NALQLLVSVG GDSAKTWIEE GVKGKEIYAV
ALTEPGAGSD LGALQTTAKL EGNELVINGE KIFTSGASFS TKMVVLARTS GNPGDRQGIS
MLLVDTKTPG IEVHKLDLMG IRGAGVSYVK FNNARVPKDS IIGKEGDAFR GAIKALMVSR
NGYAGIAVGI ARGALEDAVN RAASRKQFGK SLLEQEWISF NLADALVKVE ASRLLTMRAA
YMLDKGIEAL TEASMAKYMA AITAAEVSRT ALHIFGGHGL NRGSKVERLY RDAKIMEIAE
GTNEMQLIAV SRALQPKK
|
|---|
| |