| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_2020 |
|---|
| Symbol | |
|---|
| ID | 5105242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | - |
|---|
| Start bp | 1949602 |
|---|
| End bp | 1950294 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640507908 |
|---|
| Product | methyltransferase type 11 |
|---|
| Protein accession | YP_001192084 |
|---|
| Protein GI | 146304768 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.525149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTCCT TTGTTTGCCC ACTGGATAGA CTTCCGTTGT CAGATGATCT TAGATGCCCC
AGGGGTCACA TTTATAGGTT GATTAATGGC GTTTACGACT TTCTTCAAGA GGAGCCCAAG
AGCAACGATA TTCTAGAGAA AGTTGCACCG CTATATGAAG ATATCTGGGC TCCCCTAGGA
TTCTTGATAA CGGGTAGAAC AAGTTACTCG TCTGTGCTTA AGGATGCGGC CTCCCACTCC
TCTGGAAAGG AATTTTTGGA CGTGGGCACA GGTCCTGGTA AGATCTTTGA TTACGTAAAG
TGTGAGCAGT GTTACGGACT TGACATTTCC ATGAGATTTC TAGCTATACT CAAGCGGAAA
AGATCTAGGG TGACTGCGGT GAGAGGTGAT GCAATGTCTC TCCCCTTTGC CGACGAATCC
TTTGATGGGG CTACATCTAT GTTTGTGGTT CACATGTTTC CTGATCCATC GAAGCCAATT
TCAGAGATCT CCAGGGTCCT CAAAAGGGGC GGAAGATGTT CCATGGGCGT TCTCACTAAG
AGAGGGATGA TAGCTAATGT TCTCTCGAGA TGGTGGAAAC TAGAGTTGAG GCCTGAAACG
TATTACGTAT CTATTTCAGA GAGGTTTAAC CTCAAGACAA CAAGCGTTAG ACAGATGGGA
CCTTGGTCTC TCATAAATTG TGTAAAAAGC TAG
|
|---|
| Protein sequence | MVSFVCPLDR LPLSDDLRCP RGHIYRLING VYDFLQEEPK SNDILEKVAP LYEDIWAPLG
FLITGRTSYS SVLKDAASHS SGKEFLDVGT GPGKIFDYVK CEQCYGLDIS MRFLAILKRK
RSRVTAVRGD AMSLPFADES FDGATSMFVV HMFPDPSKPI SEISRVLKRG GRCSMGVLTK
RGMIANVLSR WWKLELRPET YYVSISERFN LKTTSVRQMG PWSLINCVKS
|
|---|
| |