Gene Msed_2016 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_2016 
Symbol 
ID5105238 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1947794 
End bp1948435 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content49% 
IMG OID640507904 
ProductFeoA family protein 
Protein accessionYP_001192080 
Protein GI146304764 
COG category[K] Transcription 
COG ID[COG1321] Mn-dependent transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.15744 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGAAT TATCGGAGCC ACTGGAAAAT TACCTAAAGG AGATCTATGA GCTGGAGGAA 
ACAAAGGGTC ACGCTAAGGT TGTTGACCTG ATCGACGCAT TCTCGATTTC CCCAGGCACA
ATTAGTAAGG CATTGGACAG GCTGGAGTCC CTTGGTTTCA TAGACAGGAA ATCAAGGAGG
ATAAAGCTTA CCGAGGACGG AAAGAGACTC GCAATTAGGT TAATAAGGTC ACACCGCCTC
TCCGAGAGGC TCCTCACAGA TATAGTGGGC CTGGACTGGA TTAGGGCGCA CGAACTGGCA
CATAGGCTAG AACACATATG GCCTGAGGAT GTTCTTGACA AGATAGATGA GGTGGTGGGT
CATCCCAAGA CCTGTCCCCA CGGGCACCCT ATCCCTGGGA GGGAAGATCG AGTGGAGGGC
GTTCCACTTA CCGAGACAAA ACCTGGAGAA TACACCGTGA TCATGATAGT TAAGGAGAAA
GAGTGGATAT TGAGAATGGC TGACTCCCTA GGCCTTCTAC CAGGGAGGAA CATCGTGGTA
CTGGATAACC TCAATGGGGA AGTGAAAGTC CAGATAAATA ACAAGGAAAA TAAGGTTCCC
CGATCTCTTG CAGAGCAGGT GATAGTCCGT GGAGCTCAGT GA
 
Protein sequence
MSELSEPLEN YLKEIYELEE TKGHAKVVDL IDAFSISPGT ISKALDRLES LGFIDRKSRR 
IKLTEDGKRL AIRLIRSHRL SERLLTDIVG LDWIRAHELA HRLEHIWPED VLDKIDEVVG
HPKTCPHGHP IPGREDRVEG VPLTETKPGE YTVIMIVKEK EWILRMADSL GLLPGRNIVV
LDNLNGEVKV QINNKENKVP RSLAEQVIVR GAQ