Gene Msed_1945 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1945 
SymbolhisB 
ID5103332 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1889505 
End bp1890086 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content52% 
IMG OID640507833 
Productimidazoleglycerol-phosphate dehydratase 
Protein accessionYP_001192009 
Protein GI146304693 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0131] Imidazoleglycerol-phosphate dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.69921 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.850703 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCTAGGT ATGTTGAGAA AGTCAGGGAA ACCAAGGAGA CTAAGGTCCA AGTGAAGCTG 
GAGCTAGACG GAGAGGGAAA GGTGGAGATC AGAACCCCAG TTCCCTTCTT TGACCACATG
CTTCACTCCA TGCTCTTTTA CATGAAGGTC AACGCCACTA TCCTAGGAGA GGATAAGCAG
GGTTACGACG ATCATCACAT AGTGGAGGAC GTTGGAATAA CCCTAGGTCA GGCCATCAAG
GATGCGTTGG GAGACAGGAG AGGGATTAAG AGGTTCTCCA GTGCTGTGAT TCCCATGGAT
GAGGCACTGG TTCTGGTGGC AGTGGACGTT TCAGGAAGGG GATACGCATC TACTAACCTG
GACTTGAAGA GAGAGAAGAT AGGAGATCTA TCCACCGAGA ACGTGGCTCA CTTCTTCTGG
TCGCTTGCAA CCAACGCTGG GATCACGCTA CACGTGAGGA AACTTGATGG GGTAAACGAG
CACCACATAG TTGAGGCAGC CTTCAAGGGA GTGGGACTTG CCCTGGGAGA GGCATGCTCC
ATTCAGGGAG AGGGGATCAG GAGCACGAAG GGATCACTAT GA
 
Protein sequence
MSRYVEKVRE TKETKVQVKL ELDGEGKVEI RTPVPFFDHM LHSMLFYMKV NATILGEDKQ 
GYDDHHIVED VGITLGQAIK DALGDRRGIK RFSSAVIPMD EALVLVAVDV SGRGYASTNL
DLKREKIGDL STENVAHFFW SLATNAGITL HVRKLDGVNE HHIVEAAFKG VGLALGEACS
IQGEGIRSTK GSL