| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1919 |
|---|
| Symbol | |
|---|
| ID | 5103306 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1867068 |
|---|
| End bp | 1867709 |
|---|
| Gene Length | 642 bp |
|---|
| Protein Length | 213 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640507807 |
|---|
| Product | V-type ATP synthase subunit D |
|---|
| Protein accession | YP_001191983 |
|---|
| Protein GI | 146304667 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1394] Archaeal/vacuolar-type H+-ATPase subunit D |
|---|
| TIGRFAM ID | [TIGR00309] H(+)-transporting ATP synthase, vacuolar type, subunit D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.487465 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.936893 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTA GGAGGGTACT ACCAACAAAG ATAAACCTCA TTAGCATGAG GAATCAGCTC
AAACTCATCA GGGTAATCAA AAGACTCTTA GAGAACAAGA GGGAAGTTCT TCTAATATAT
CTCAGGACCT ACGTAAATGA GTACGAAAAA ATATACAATG AGGTTAACGA GGCCTTAAAG
GAGGTCTACG ACAGTTACAT GAAGGCCGTG GTTGACGAGG GTATTGGGAA CATAGAGACC
ATAGCCAATT CTCAAAACAG TTCCCTCCAG CTAAAGAGCT CCACCAAGGT CATCTTCGGG
GTCAAGATCC CTATCACTGA GCTAAGTGAA GCCAGTATCC CTCCAAAGCC CTTCAGTGAA
GTTGAAACAT CTCCCTATCT TTCTGAGGCC TATGACAGGA TGAGGGAGAC TATGGTTAAG
GTAATCAAGC TTGTTGAGCT TGAGTCTACC ATTAGGTCCC TCGTTGCAGA GCTTAGAAGA
ACACAACGTC TGATTAACGC CATAGATACC TCAATCCTTC CCTTCTACAA TAACTCCGTG
AAGTACATTA GATCAATTCT GAACGACAGG AGCAGGGAAG AGTTCGTAAG GCTTAAAGTC
ACCAGAAGGA TCTTACAGAG GAGGAGAGGA GATGGACGCT AA
|
|---|
| Protein sequence | MSSRRVLPTK INLISMRNQL KLIRVIKRLL ENKREVLLIY LRTYVNEYEK IYNEVNEALK
EVYDSYMKAV VDEGIGNIET IANSQNSSLQ LKSSTKVIFG VKIPITELSE ASIPPKPFSE
VETSPYLSEA YDRMRETMVK VIKLVELEST IRSLVAELRR TQRLINAIDT SILPFYNNSV
KYIRSILNDR SREEFVRLKV TRRILQRRRG DGR
|
|---|
| |