| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1870 |
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| Symbol | |
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| ID | 5104138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Metallosphaera sedula DSM 5348 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009440 |
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| Strand | - |
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| Start bp | 1813433 |
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| End bp | 1814047 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640507756 |
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| Product | 3-dehydroquinate dehydratase |
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| Protein accession | YP_001191934 |
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| Protein GI | 146304618 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0710] 3-dehydroquinate dehydratase |
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| TIGRFAM ID | [TIGR01093] 3-dehydroquinate dehydratase, type I |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.438202 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATAGGC CACTTATTGT CGCTTCCCTG CCAGTGACCT CACCTGGAGA CATAAGCAGA
GTAAAGGACA TAGATGCCGA TCTCGTTGAA TTAAGACTGG ATTACTCCAG GGAGTTTCCA
AGGCCTCAGG ACCTCCTCCC ATACCGAGAT AGGATCTTGG TCACTCTAAG AGACAGGGAA
GAGGGAGGCC AAGGTAACTT TACCGACAAT TTCAAGGAAA CTTTCCTTAA CGAGCTCATG
AAACTTGGCA TTCTCTATGA CGTAGAGGCA TCCTTCCTTT CCAGGAGGAG AGTCCAATTC
AGGGAAAAGG TGGTATCCGC ACACTACTTT CATCGCCTAC CCTCCAGGGA GGAGGTTGAC
TGCCTATTCT CCACATATCG CGAAGCCTTC ACAGTGAAGA TCGCCGTGTC CAACCTACCT
GGATACAGGG AGATTCTCTC CTACATTTCC ACGAAGCCGG GCTCCACTTT CATGCCTATG
AGCCCTGACC CCCTGGAGAG ATTGGCGATC TCCCTTCTTG GCTCGAGGCT ACTCTACACC
TACGTGGATT CCCCAACGGC GACGGGCCAA CTACACTATC TGGAGGCAAA AAGGATTCTC
AACTGTCTCT TCTAG
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| Protein sequence | MNRPLIVASL PVTSPGDISR VKDIDADLVE LRLDYSREFP RPQDLLPYRD RILVTLRDRE
EGGQGNFTDN FKETFLNELM KLGILYDVEA SFLSRRRVQF REKVVSAHYF HRLPSREEVD
CLFSTYREAF TVKIAVSNLP GYREILSYIS TKPGSTFMPM SPDPLERLAI SLLGSRLLYT
YVDSPTATGQ LHYLEAKRIL NCLF
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