Gene Msed_1801 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMsed_1801 
Symbol 
ID5104176 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMetallosphaera sedula DSM 5348 
KingdomArchaea 
Replicon accessionNC_009440 
Strand
Start bp1740560 
End bp1740721 
Gene Length162 bp 
Protein Length53 aa 
Translation table11 
GC content57% 
IMG OID640507700 
Productnucleolar RNA-binding protein Nop10p 
Protein accessionYP_001191879 
Protein GI146304563 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2260] Predicted Zn-ribbon RNA-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGGCTAA TCAGGAAGTG TCCCAAGGAC AAGGTTTACA CCCTTCACGA GAGGTGTCCC 
GCCTGCGGAG GCGAGACGAA GCCCGCTCAC CCTCCCAGGT TCTCTCCTGT GGACAGAATG
GTGAAGTATA GGATCCTGGC CAGGAGAGGG AAAGTCTGCT GA
 
Protein sequence
MRLIRKCPKD KVYTLHERCP ACGGETKPAH PPRFSPVDRM VKYRILARRG KVC