| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Msed_1776 |
|---|
| Symbol | |
|---|
| ID | 5104776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Metallosphaera sedula DSM 5348 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009440 |
|---|
| Strand | + |
|---|
| Start bp | 1718690 |
|---|
| End bp | 1720171 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640507674 |
|---|
| Product | 4-hydroxyphenylacetate 3-hydroxylase |
|---|
| Protein accession | YP_001191855 |
|---|
| Protein GI | 146304539 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2368] Aromatic ring hydroxylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.193392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCCGAA AGGGAATAGA TTTCATAAAA AGCATGAAGG AAGGACACCA CGGGGAGATA
TACTATAATG GGGAGAAGGT AAGTGACGTA ACAGAGCATC CCGCATTTAG GGCTGCCATA
CACACGGTCT CAGACTACTA CGACCTTCAT TGGAAGGATG AATACAAGGA ATACCTGAGG
GTGTATAACC CTGACGTGGG GGAGGAGACC AGTATAACCT TCTTCAGGCC AAGGAATAAG
GAGGAGTTGA GAAGGCTGAG GATGGGGATA AGTAAGATTT ACGACTTCTA TAGGGGATTC
TTCGGTAGGA GTCCAGATTA CCTAAACGTA TGGACCATGT TATTCTACGC ACATGCTGAC
GACTACTTCG GTAAGGTGTT TGGAAATAAG ATGATGGAGA ACGTGATAGA GATATATAGG
GAGGCAGCTA AACAGGACCT TTTCTACACG CACGCCATTG TCGCCCCGAT GTATGATAGA
TCCAGACCAC CCTCACAATG GGAGGACCCC TACATACAGG TGGGCGTGGT CAGGGAAACC
ACCGAGGGAC TCGTGGTGAG GGGCGCCGCG CTACTATCCA CTGCAGGTCC CTACTCCGAA
AGGTTGTGGT ACCTGCCCAA CATCAAGAGG GACACCGACC CCAGGTATTC CGTGTTCTTC
TCACTTCCCA CGGAAAGTAA GGGTGTAAAG TTCATCTCCA GGAGGGGGTT CCATCCCAAG
GAGGAGTTCG GCGAGTTTGA GTACCCGATT ACCTCTAGAT ATGAGGAACC TGACGCCATT
ATGGTATTGG ACAACGTTTT GATACCTTGG GATAGGGTGA TCTTTTACAA GAAACCTGAG
GAGATAGAGG GGTTCATGTG GCATACGGTG AACCTGAGGG GATGGTTCAA CTGGCACTTC
GTGATTCAGC ACTACTCCAG GACGAAGTTC TTGGCAGGCC TGGCCATAGC CATTGCTGAG
GCCGTGGGGA TTAACAATTT CATCAATGTG CAGGAGAAGT TGGGAGAGAT CCTAATCTAC
CTAGCAATGT ATGAAGCTGG GATGGTGGCA TCAGAGGAAC TAGGGGAGCA ATTACCTGGA
GTATATAGAC CGAATCCGCA GATAGCCATA GCCACTAGCT CCATGGGAAT GAAGGCATTA
CCCAGGATAA ACGAGATACT TAGGTCCATA AGTGCTGGAT CTTCTATCCC CGTTCCAGCG
GGAATTAGGG ACTTTGAAAA CCCCGAGGAG AGAGCTCTCC TGGACAAGTA CCTAGCGTCC
AAGGGGTTGC CAGCCCTAGA GAGGGTGAAG CTGTTCAATA TTCTCTGGGA CACCATAGGT
TCTGAGACCG GGATGAGGTA TGAGCAGTAC GACAGGTTCA GTAGGGGAGA TCCCACAATT
AGGTGGGCTC AGATGTATAC CGAGGTGTAT AAGGACAGAA AGCAAGAGTT TGTGAAGATG
GTGAGGGACA TCATGGATCA GATGCCAAAC CCTAAGGCAT AA
|
|---|
| Protein sequence | MIRKGIDFIK SMKEGHHGEI YYNGEKVSDV TEHPAFRAAI HTVSDYYDLH WKDEYKEYLR
VYNPDVGEET SITFFRPRNK EELRRLRMGI SKIYDFYRGF FGRSPDYLNV WTMLFYAHAD
DYFGKVFGNK MMENVIEIYR EAAKQDLFYT HAIVAPMYDR SRPPSQWEDP YIQVGVVRET
TEGLVVRGAA LLSTAGPYSE RLWYLPNIKR DTDPRYSVFF SLPTESKGVK FISRRGFHPK
EEFGEFEYPI TSRYEEPDAI MVLDNVLIPW DRVIFYKKPE EIEGFMWHTV NLRGWFNWHF
VIQHYSRTKF LAGLAIAIAE AVGINNFINV QEKLGEILIY LAMYEAGMVA SEELGEQLPG
VYRPNPQIAI ATSSMGMKAL PRINEILRSI SAGSSIPVPA GIRDFENPEE RALLDKYLAS
KGLPALERVK LFNILWDTIG SETGMRYEQY DRFSRGDPTI RWAQMYTEVY KDRKQEFVKM
VRDIMDQMPN PKA
|
|---|
| |